Hb_003297_030

Information

Type -
Description -
Location Contig3297: 15696-20906
Sequence    

Annotation

kegg
ID bvg:104897713
description uncharacterized LOC104897713
nr
ID XP_012080265.1
description PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AIJ8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031733 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34645: 15373-15660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003297_030 0.0 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
2 Hb_010863_080 0.0692996768 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
3 Hb_003609_040 0.0766599308 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
4 Hb_001635_100 0.0789037082 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
5 Hb_098993_010 0.0790081389 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
6 Hb_000179_210 0.0808927291 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
7 Hb_000030_010 0.0811325345 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
8 Hb_000417_180 0.0847572545 - - 60S ribosomal protein L11, putative [Ricinus communis]
9 Hb_007547_010 0.0850751773 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
10 Hb_002631_050 0.0857444938 - - membrane associated ring finger 1,8, putative [Ricinus communis]
11 Hb_001936_050 0.0885912975 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
12 Hb_000421_260 0.0894405242 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
13 Hb_185467_020 0.0895889125 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_000481_010 0.0898081774 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
15 Hb_002477_160 0.0902632551 - - hypothetical protein L484_013453 [Morus notabilis]
16 Hb_000340_510 0.0909834757 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
17 Hb_008453_150 0.0918356874 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
18 Hb_153258_010 0.0932382408 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
19 Hb_000017_120 0.0933234329 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
20 Hb_007558_140 0.0937221406 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003297_030 Hb_003297_030 Hb_010863_080 Hb_010863_080 Hb_003297_030--Hb_010863_080 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_000179_210 Hb_000179_210 Hb_003297_030--Hb_000179_210 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010 Hb_000417_180 Hb_000417_180 Hb_010863_080--Hb_000417_180 Hb_000155_190 Hb_000155_190 Hb_010863_080--Hb_000155_190 Hb_168707_030 Hb_168707_030 Hb_010863_080--Hb_168707_030 Hb_010863_080--Hb_000179_210 Hb_004195_160 Hb_004195_160 Hb_010863_080--Hb_004195_160 Hb_000001_020 Hb_000001_020 Hb_003609_040--Hb_000001_020 Hb_007547_010 Hb_007547_010 Hb_003609_040--Hb_007547_010 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_005062_070 Hb_005062_070 Hb_001635_100--Hb_005062_070 Hb_001635_100--Hb_000030_010 Hb_004046_010 Hb_004046_010 Hb_001635_100--Hb_004046_010 Hb_002477_160 Hb_002477_160 Hb_001635_100--Hb_002477_160 Hb_003861_080 Hb_003861_080 Hb_001635_100--Hb_003861_080 Hb_007575_040 Hb_007575_040 Hb_098993_010--Hb_007575_040 Hb_000025_480 Hb_000025_480 Hb_098993_010--Hb_000025_480 Hb_007943_080 Hb_007943_080 Hb_098993_010--Hb_007943_080 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_007558_140 Hb_007558_140 Hb_098993_010--Hb_007558_140 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_178968_110 Hb_178968_110 Hb_000179_210--Hb_178968_110 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000059_220 Hb_000059_220 Hb_000179_210--Hb_000059_220 Hb_000457_150 Hb_000457_150 Hb_000179_210--Hb_000457_150 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_000030_010--Hb_005062_070 Hb_000030_010--Hb_007547_010 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_000392_300 Hb_000392_300 Hb_000030_010--Hb_000392_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.31898 0.661047 0.370196 0.408615 2.24403 1.90945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18803 1.56594 2.41339 0.472833 0.423695

CAGE analysis