Hb_000943_070

Information

Type -
Description -
Location Contig943: 82162-87947
Sequence    

Annotation

kegg
ID rcu:RCOM_0461870
description hypothetical protein
nr
ID XP_012074061.1
description PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08671 PE=4 SV=1
Gene Ontology
ID GO:0016192
description syntaxin t-snare family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63225: 82141-87919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000943_070 0.0 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
2 Hb_003609_040 0.0608472191 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
3 Hb_003642_060 0.0652019857 - - hypothetical protein RCOM_1189860 [Ricinus communis]
4 Hb_005306_110 0.0669773304 - - casein kinase, putative [Ricinus communis]
5 Hb_001214_130 0.0676028963 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
6 Hb_003406_010 0.0725028169 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
7 Hb_000645_050 0.0737515634 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
8 Hb_028639_060 0.0752288893 - - transporter, putative [Ricinus communis]
9 Hb_002609_110 0.0752492915 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
10 Hb_000204_040 0.0756042572 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
11 Hb_000803_300 0.0769208233 - - nuclear movement protein nudc, putative [Ricinus communis]
12 Hb_002149_020 0.0782567423 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
13 Hb_000815_210 0.0784128047 - - uncoupling protein 3, partial [Manihot esculenta]
14 Hb_000386_040 0.07844594 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_000390_060 0.0786555244 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
16 Hb_000661_050 0.0791722369 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
17 Hb_000905_190 0.0794927269 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
18 Hb_003005_020 0.0800584523 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
19 Hb_000134_090 0.0800631609 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
20 Hb_000030_010 0.0800995265 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]

Gene co-expression network

sample Hb_000943_070 Hb_000943_070 Hb_003609_040 Hb_003609_040 Hb_000943_070--Hb_003609_040 Hb_003642_060 Hb_003642_060 Hb_000943_070--Hb_003642_060 Hb_005306_110 Hb_005306_110 Hb_000943_070--Hb_005306_110 Hb_001214_130 Hb_001214_130 Hb_000943_070--Hb_001214_130 Hb_003406_010 Hb_003406_010 Hb_000943_070--Hb_003406_010 Hb_000645_050 Hb_000645_050 Hb_000943_070--Hb_000645_050 Hb_000001_020 Hb_000001_020 Hb_003609_040--Hb_000001_020 Hb_007547_010 Hb_007547_010 Hb_003609_040--Hb_007547_010 Hb_000030_010 Hb_000030_010 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_003297_030 Hb_003297_030 Hb_003609_040--Hb_003297_030 Hb_003642_060--Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_003642_060--Hb_028639_060 Hb_168707_030 Hb_168707_030 Hb_003642_060--Hb_168707_030 Hb_000905_190 Hb_000905_190 Hb_003642_060--Hb_000905_190 Hb_000089_220 Hb_000089_220 Hb_003642_060--Hb_000089_220 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_001584_330 Hb_001584_330 Hb_005306_110--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_005306_110--Hb_001623_420 Hb_000120_950 Hb_000120_950 Hb_005306_110--Hb_000120_950 Hb_005306_110--Hb_003642_060 Hb_001214_130--Hb_028639_060 Hb_001214_130--Hb_000905_190 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150 Hb_003406_010--Hb_000089_220 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_007218_080 Hb_007218_080 Hb_003406_010--Hb_007218_080 Hb_003406_010--Hb_000645_050 Hb_054865_100 Hb_054865_100 Hb_000645_050--Hb_054865_100 Hb_000327_120 Hb_000327_120 Hb_000645_050--Hb_000327_120 Hb_001369_180 Hb_001369_180 Hb_000645_050--Hb_001369_180 Hb_003030_070 Hb_003030_070 Hb_000645_050--Hb_003030_070 Hb_000645_050--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.228 45.0844 28.6008 43.2436 123.16 132.328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.8495 77.8171 84.7875 28.8024 29.589

CAGE analysis