Hb_000638_080

Information

Type -
Description -
Location Contig638: 67983-76170
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06600g
description POPTRDRAFT_818254; hypothetical protein
nr
ID XP_012070598.1
description PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KT88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03718 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52008: 68964-74741 , PASA_asmbl_52009: 68038-69986 , PASA_asmbl_52010: 68038-68938 , PASA_asmbl_52011: 75380-75871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_080 0.0 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
2 Hb_000720_120 0.0648593959 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
3 Hb_001135_050 0.0681070038 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
4 Hb_005539_030 0.0726018428 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
5 Hb_000169_010 0.0738339265 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
6 Hb_004048_070 0.0744915575 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
7 Hb_001221_410 0.0824683083 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
8 Hb_007254_040 0.0834890901 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
9 Hb_015746_010 0.0854004679 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
10 Hb_004310_030 0.0872864926 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
11 Hb_012022_030 0.0881923394 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
12 Hb_000877_060 0.08827544 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
13 Hb_003392_040 0.0902634049 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
14 Hb_001404_100 0.0905034431 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
15 Hb_000853_170 0.0936243556 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
16 Hb_001386_120 0.0936947335 - - PREDICTED: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
17 Hb_000109_090 0.0954127148 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
18 Hb_001138_050 0.096035922 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
19 Hb_032717_080 0.0961753809 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
20 Hb_004920_040 0.0967635156 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]

Gene co-expression network

sample Hb_000638_080 Hb_000638_080 Hb_000720_120 Hb_000720_120 Hb_000638_080--Hb_000720_120 Hb_001135_050 Hb_001135_050 Hb_000638_080--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_000638_080--Hb_005539_030 Hb_000169_010 Hb_000169_010 Hb_000638_080--Hb_000169_010 Hb_004048_070 Hb_004048_070 Hb_000638_080--Hb_004048_070 Hb_001221_410 Hb_001221_410 Hb_000638_080--Hb_001221_410 Hb_000720_120--Hb_000169_010 Hb_001138_050 Hb_001138_050 Hb_000720_120--Hb_001138_050 Hb_003392_040 Hb_003392_040 Hb_000720_120--Hb_003392_040 Hb_000613_140 Hb_000613_140 Hb_000720_120--Hb_000613_140 Hb_000032_570 Hb_000032_570 Hb_000720_120--Hb_000032_570 Hb_001246_090 Hb_001246_090 Hb_001135_050--Hb_001246_090 Hb_001135_050--Hb_003392_040 Hb_001135_050--Hb_000169_010 Hb_007254_040 Hb_007254_040 Hb_001135_050--Hb_007254_040 Hb_001135_050--Hb_004048_070 Hb_005539_030--Hb_000169_010 Hb_004970_110 Hb_004970_110 Hb_005539_030--Hb_004970_110 Hb_000483_360 Hb_000483_360 Hb_005539_030--Hb_000483_360 Hb_005539_030--Hb_004048_070 Hb_005539_030--Hb_007254_040 Hb_000169_010--Hb_003392_040 Hb_000169_010--Hb_007254_040 Hb_000169_010--Hb_000032_570 Hb_015746_010 Hb_015746_010 Hb_004048_070--Hb_015746_010 Hb_032717_080 Hb_032717_080 Hb_004048_070--Hb_032717_080 Hb_004048_070--Hb_004970_110 Hb_004048_070--Hb_007254_040 Hb_001221_410--Hb_007254_040 Hb_001221_410--Hb_032717_080 Hb_002105_090 Hb_002105_090 Hb_001221_410--Hb_002105_090 Hb_001221_410--Hb_000169_010 Hb_001221_410--Hb_001135_050 Hb_001221_410--Hb_001246_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4126 6.29068 4.68008 3.91816 12.4047 11.0174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3958 13.8886 8.98419 9.59384 2.77905

CAGE analysis