Hb_004970_110

Information

Type -
Description -
Location Contig4970: 82628-88381
Sequence    

Annotation

kegg
ID rcu:RCOM_1590080
description WD-repeat protein, putative
nr
ID XP_012068334.1
description PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
swissprot
ID Q9M3B4
description Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1
trembl
ID A0A067LB72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16127 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein root initiation defective 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45551: 82814-87668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_110 0.0 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
2 Hb_007317_180 0.0544050149 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
3 Hb_005539_030 0.0592412185 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
4 Hb_007254_040 0.064877986 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
5 Hb_004048_070 0.0681987254 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
6 Hb_027472_150 0.0691247713 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
7 Hb_000169_010 0.0778293522 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
8 Hb_063090_010 0.079695886 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
9 Hb_011310_190 0.0835517601 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
10 Hb_002027_070 0.0877610162 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
11 Hb_001329_220 0.0896439774 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007441_120 0.090061705 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
13 Hb_000483_200 0.0910750962 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
14 Hb_000057_200 0.0914320075 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
15 Hb_001199_020 0.0928033839 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
16 Hb_032717_080 0.0928348001 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
17 Hb_000058_100 0.0933935744 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
18 Hb_000116_440 0.0935902682 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
19 Hb_000720_120 0.0943509184 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
20 Hb_000500_090 0.0949974177 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004970_110 Hb_004970_110 Hb_007317_180 Hb_007317_180 Hb_004970_110--Hb_007317_180 Hb_005539_030 Hb_005539_030 Hb_004970_110--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_004970_110--Hb_007254_040 Hb_004048_070 Hb_004048_070 Hb_004970_110--Hb_004048_070 Hb_027472_150 Hb_027472_150 Hb_004970_110--Hb_027472_150 Hb_000169_010 Hb_000169_010 Hb_004970_110--Hb_000169_010 Hb_007317_180--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_007317_180--Hb_011310_190 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_008554_020 Hb_008554_020 Hb_007317_180--Hb_008554_020 Hb_005539_030--Hb_000169_010 Hb_000483_360 Hb_000483_360 Hb_005539_030--Hb_000483_360 Hb_005539_030--Hb_004048_070 Hb_000638_080 Hb_000638_080 Hb_005539_030--Hb_000638_080 Hb_005539_030--Hb_007254_040 Hb_007254_040--Hb_008554_020 Hb_007254_040--Hb_000169_010 Hb_007254_040--Hb_011310_190 Hb_001135_050 Hb_001135_050 Hb_007254_040--Hb_001135_050 Hb_015746_010 Hb_015746_010 Hb_004048_070--Hb_015746_010 Hb_032717_080 Hb_032717_080 Hb_004048_070--Hb_032717_080 Hb_004048_070--Hb_007254_040 Hb_004048_070--Hb_001135_050 Hb_000058_100 Hb_000058_100 Hb_027472_150--Hb_000058_100 Hb_002728_070 Hb_002728_070 Hb_027472_150--Hb_002728_070 Hb_001579_220 Hb_001579_220 Hb_027472_150--Hb_001579_220 Hb_002473_130 Hb_002473_130 Hb_027472_150--Hb_002473_130 Hb_000086_380 Hb_000086_380 Hb_027472_150--Hb_000086_380 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_000169_010--Hb_001135_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2816 8.43655 6.20221 8.75366 20.9076 27.1029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.6562 19.0881 14.9698 19.856 9.13845

CAGE analysis