Hb_011310_190

Information

Type -
Description -
Location Contig11310: 104119-107594
Sequence    

Annotation

kegg
ID rcu:RCOM_0924030
description hypothetical protein
nr
ID XP_012076567.1
description PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RP48
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0924030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03923: 103089-103673 , PASA_asmbl_03924: 104144-107529 , PASA_asmbl_03925: 104161-107526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_190 0.0 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
2 Hb_007254_040 0.0631102962 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
3 Hb_032717_080 0.0671137599 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
4 Hb_005398_030 0.0773858933 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
5 Hb_007317_180 0.0793358698 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
6 Hb_001221_410 0.0806621791 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
7 Hb_000103_090 0.0809050627 - - PREDICTED: protein RDM1 [Jatropha curcas]
8 Hb_000116_440 0.0819919538 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
9 Hb_000363_500 0.0826811928 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
10 Hb_004970_110 0.0835517601 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
11 Hb_003847_080 0.0866051969 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
12 Hb_008554_020 0.0869572885 - - -
13 Hb_009954_040 0.0870045184 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
14 Hb_000300_610 0.0894991885 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
15 Hb_004128_190 0.0919057447 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
16 Hb_007617_050 0.0923680958 - - Isoflavone reductase, putative [Ricinus communis]
17 Hb_000169_010 0.0935361099 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
18 Hb_000500_090 0.095095549 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
19 Hb_003020_230 0.0956568541 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
20 Hb_002374_160 0.0959461782 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011310_190 Hb_011310_190 Hb_007254_040 Hb_007254_040 Hb_011310_190--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_011310_190--Hb_032717_080 Hb_005398_030 Hb_005398_030 Hb_011310_190--Hb_005398_030 Hb_007317_180 Hb_007317_180 Hb_011310_190--Hb_007317_180 Hb_001221_410 Hb_001221_410 Hb_011310_190--Hb_001221_410 Hb_000103_090 Hb_000103_090 Hb_011310_190--Hb_000103_090 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007254_040--Hb_007317_180 Hb_000169_010 Hb_000169_010 Hb_007254_040--Hb_000169_010 Hb_004970_110 Hb_004970_110 Hb_007254_040--Hb_004970_110 Hb_001135_050 Hb_001135_050 Hb_007254_040--Hb_001135_050 Hb_032717_080--Hb_000103_090 Hb_004048_070 Hb_004048_070 Hb_032717_080--Hb_004048_070 Hb_032717_080--Hb_007254_040 Hb_000613_140 Hb_000613_140 Hb_032717_080--Hb_000613_140 Hb_002105_090 Hb_002105_090 Hb_032717_080--Hb_002105_090 Hb_000087_020 Hb_000087_020 Hb_005398_030--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_005398_030--Hb_000024_080 Hb_117134_010 Hb_117134_010 Hb_005398_030--Hb_117134_010 Hb_001235_070 Hb_001235_070 Hb_005398_030--Hb_001235_070 Hb_000676_290 Hb_000676_290 Hb_005398_030--Hb_000676_290 Hb_007317_180--Hb_004970_110 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_007317_180--Hb_008554_020 Hb_001221_410--Hb_007254_040 Hb_001221_410--Hb_032717_080 Hb_001221_410--Hb_002105_090 Hb_001221_410--Hb_000169_010 Hb_001221_410--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001221_410--Hb_001246_090 Hb_002890_140 Hb_002890_140 Hb_000103_090--Hb_002890_140 Hb_033834_040 Hb_033834_040 Hb_000103_090--Hb_033834_040 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000529_190 Hb_000529_190 Hb_000103_090--Hb_000529_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4184 7.08362 3.95811 12.5961 19.1533 27.1414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.0012 23.2424 15.77 12.6296 8.2688

CAGE analysis