Hb_007317_180

Information

Type -
Description -
Location Contig7317: 114132-123457
Sequence    

Annotation

kegg
ID cic:CICLE_v10028933mg
description hypothetical protein
nr
ID XP_006424218.1
description hypothetical protein CICLE_v10028933mg [Citrus clementina]
swissprot
ID Q3HVN1
description N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1
trembl
ID A0A067F4I9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022174mg PE=4 SV=1
Gene Ontology
ID GO:0050126
description n-carbamoylputrescine amidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56067: 114181-123368 , PASA_asmbl_56068: 116737-116835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_180 0.0 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
2 Hb_004970_110 0.0544050149 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
3 Hb_007254_040 0.0616339304 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
4 Hb_011310_190 0.0793358698 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
5 Hb_004048_070 0.0803859923 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
6 Hb_002027_070 0.0817436663 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
7 Hb_008554_020 0.0821991415 - - -
8 Hb_027472_150 0.0837581154 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
9 Hb_000500_090 0.0893824112 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
10 Hb_007441_120 0.0897451692 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
11 Hb_032717_080 0.0903484663 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
12 Hb_005539_030 0.0926530092 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
13 Hb_000169_010 0.1007588549 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
14 Hb_000363_500 0.1010919997 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
15 Hb_001329_220 0.1021149078 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000061_320 0.1027659536 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
17 Hb_009954_040 0.1035552364 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
18 Hb_004310_030 0.1052223961 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
19 Hb_000580_190 0.1064385713 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
20 Hb_004055_030 0.1068152581 - - casein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007317_180 Hb_007317_180 Hb_004970_110 Hb_004970_110 Hb_007317_180--Hb_004970_110 Hb_007254_040 Hb_007254_040 Hb_007317_180--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_007317_180--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_008554_020 Hb_008554_020 Hb_007317_180--Hb_008554_020 Hb_005539_030 Hb_005539_030 Hb_004970_110--Hb_005539_030 Hb_004970_110--Hb_007254_040 Hb_004970_110--Hb_004048_070 Hb_027472_150 Hb_027472_150 Hb_004970_110--Hb_027472_150 Hb_000169_010 Hb_000169_010 Hb_004970_110--Hb_000169_010 Hb_007254_040--Hb_008554_020 Hb_007254_040--Hb_000169_010 Hb_007254_040--Hb_011310_190 Hb_001135_050 Hb_001135_050 Hb_007254_040--Hb_001135_050 Hb_032717_080 Hb_032717_080 Hb_011310_190--Hb_032717_080 Hb_005398_030 Hb_005398_030 Hb_011310_190--Hb_005398_030 Hb_001221_410 Hb_001221_410 Hb_011310_190--Hb_001221_410 Hb_000103_090 Hb_000103_090 Hb_011310_190--Hb_000103_090 Hb_015746_010 Hb_015746_010 Hb_004048_070--Hb_015746_010 Hb_004048_070--Hb_032717_080 Hb_004048_070--Hb_007254_040 Hb_004048_070--Hb_001135_050 Hb_004048_070--Hb_005539_030 Hb_002027_070--Hb_004970_110 Hb_002027_070--Hb_027472_150 Hb_006114_030 Hb_006114_030 Hb_002027_070--Hb_006114_030 Hb_003673_060 Hb_003673_060 Hb_002027_070--Hb_003673_060 Hb_000500_090 Hb_000500_090 Hb_002027_070--Hb_000500_090 Hb_004310_030 Hb_004310_030 Hb_008554_020--Hb_004310_030 Hb_008554_020--Hb_011310_190 Hb_003052_100 Hb_003052_100 Hb_008554_020--Hb_003052_100 Hb_117134_010 Hb_117134_010 Hb_008554_020--Hb_117134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.301 14.8976 16.1267 28.939 46.7698 73.9197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.3711 43.831 44.7916 50.1115 22.1678

CAGE analysis