Hb_000676_290

Information

Type -
Description -
Location Contig676: 242843-244531
Sequence    

Annotation

kegg
ID rcu:RCOM_0415510
description glutaredoxin-1, grx1, putative
nr
ID XP_012078390.1
description PREDICTED: glutaredoxin-C3 [Jatropha curcas]
swissprot
ID Q9FVX1
description Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1
trembl
ID A0A067KLJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13662 PE=4 SV=1
Gene Ontology
ID GO:0005794
description glutaredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53592: 242831-244414
cDNA
(Sanger)
(ID:Location)		 011_P16.ab1: 242854-244405

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_290 0.0 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
2 Hb_000024_080 0.0668736266 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
3 Hb_000087_020 0.0765806238 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
4 Hb_005398_030 0.0789066343 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
5 Hb_010180_020 0.0829627829 - - hypothetical protein glysoja_030394 [Glycine soja]
6 Hb_071130_030 0.0847123017 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
7 Hb_002112_040 0.0858799228 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
8 Hb_002272_260 0.0868957693 - - -
9 Hb_000230_540 0.0870009601 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
10 Hb_000963_190 0.087999067 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
11 Hb_000317_340 0.0882806205 - - conserved hypothetical protein [Ricinus communis]
12 Hb_025193_050 0.0884902409 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
13 Hb_000363_500 0.0901144591 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
14 Hb_000787_140 0.0909401178 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
15 Hb_005686_110 0.0912188427 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
16 Hb_000120_760 0.0912296424 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
17 Hb_000771_100 0.0914274561 - - Os06g0527300 [Oryza sativa Japonica Group]
18 Hb_001235_070 0.0916648995 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004128_190 0.0930744645 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
20 Hb_004453_150 0.0934727368 - - BnaC02g13240D [Brassica napus]

Gene co-expression network

sample Hb_000676_290 Hb_000676_290 Hb_000024_080 Hb_000024_080 Hb_000676_290--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_000676_290--Hb_000087_020 Hb_005398_030 Hb_005398_030 Hb_000676_290--Hb_005398_030 Hb_010180_020 Hb_010180_020 Hb_000676_290--Hb_010180_020 Hb_071130_030 Hb_071130_030 Hb_000676_290--Hb_071130_030 Hb_002112_040 Hb_002112_040 Hb_000676_290--Hb_002112_040 Hb_000024_080--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000024_080--Hb_004032_100 Hb_000024_080--Hb_010180_020 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_000024_080--Hb_005398_030 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_000087_020--Hb_005398_030 Hb_000087_020--Hb_004032_100 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_000751_130 Hb_000751_130 Hb_000087_020--Hb_000751_130 Hb_117134_010 Hb_117134_010 Hb_005398_030--Hb_117134_010 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_001235_070 Hb_001235_070 Hb_005398_030--Hb_001235_070 Hb_001604_080 Hb_001604_080 Hb_010180_020--Hb_001604_080 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_071130_030--Hb_005398_030 Hb_071130_030--Hb_117134_010 Hb_000963_190 Hb_000963_190 Hb_071130_030--Hb_000963_190 Hb_071130_030--Hb_001235_070 Hb_002685_190 Hb_002685_190 Hb_071130_030--Hb_002685_190 Hb_001998_230 Hb_001998_230 Hb_002112_040--Hb_001998_230 Hb_000363_500 Hb_000363_500 Hb_002112_040--Hb_000363_500 Hb_004072_020 Hb_004072_020 Hb_002112_040--Hb_004072_020 Hb_002616_050 Hb_002616_050 Hb_002112_040--Hb_002616_050 Hb_002112_040--Hb_004128_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2352 6.38894 10.8341 16.9267 24.5464 56.2243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.5686 45.9231 27.322 13.2912 10.7789

CAGE analysis