Hb_002112_040

Information

Type -
Description -
Location Contig2112: 78751-91898
Sequence    

Annotation

kegg
ID rcu:RCOM_0341930
description hypothetical protein
nr
ID XP_012080841.1
description PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K344
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16206 PE=4 SV=1
Gene Ontology
ID GO:0006996
description PREDICTED: uncharacterized protein LOC105641009

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21906: 78787-83331
cDNA
(Sanger)
(ID:Location)		 045_N22.ab1: 78909-83180

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002112_040 0.0 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
2 Hb_001998_230 0.0601944996 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
3 Hb_000363_500 0.0818123133 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
4 Hb_004072_020 0.0850775704 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
5 Hb_000676_290 0.0858799228 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
6 Hb_002616_050 0.0874351518 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
7 Hb_004128_190 0.0898931217 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
8 Hb_007193_100 0.0910479569 - - syntaxin family protein [Populus trichocarpa]
9 Hb_000023_140 0.0913519462 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
10 Hb_010180_020 0.0914990888 - - hypothetical protein glysoja_030394 [Glycine soja]
11 Hb_000365_310 0.0919406723 - - auxin:hydrogen symporter, putative [Ricinus communis]
12 Hb_141131_010 0.0922689702 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
13 Hb_010436_070 0.0923585171 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
14 Hb_029510_140 0.0931542938 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
15 Hb_000024_080 0.093265606 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
16 Hb_004545_060 0.0932870309 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
17 Hb_000175_070 0.0942366543 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
18 Hb_006788_070 0.0975021615 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
19 Hb_010180_010 0.0985714597 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
20 Hb_125000_010 0.1001513485 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002112_040 Hb_002112_040 Hb_001998_230 Hb_001998_230 Hb_002112_040--Hb_001998_230 Hb_000363_500 Hb_000363_500 Hb_002112_040--Hb_000363_500 Hb_004072_020 Hb_004072_020 Hb_002112_040--Hb_004072_020 Hb_000676_290 Hb_000676_290 Hb_002112_040--Hb_000676_290 Hb_002616_050 Hb_002616_050 Hb_002112_040--Hb_002616_050 Hb_004128_190 Hb_004128_190 Hb_002112_040--Hb_004128_190 Hb_010180_010 Hb_010180_010 Hb_001998_230--Hb_010180_010 Hb_001998_230--Hb_004072_020 Hb_024714_100 Hb_024714_100 Hb_001998_230--Hb_024714_100 Hb_001998_230--Hb_000363_500 Hb_012799_160 Hb_012799_160 Hb_001998_230--Hb_012799_160 Hb_000363_500--Hb_002616_050 Hb_003847_080 Hb_003847_080 Hb_000363_500--Hb_003847_080 Hb_002078_150 Hb_002078_150 Hb_000363_500--Hb_002078_150 Hb_000363_500--Hb_004128_190 Hb_000465_430 Hb_000465_430 Hb_000363_500--Hb_000465_430 Hb_005063_040 Hb_005063_040 Hb_000363_500--Hb_005063_040 Hb_004072_020--Hb_002616_050 Hb_004072_020--Hb_024714_100 Hb_004072_020--Hb_000363_500 Hb_005862_010 Hb_005862_010 Hb_004072_020--Hb_005862_010 Hb_000024_080 Hb_000024_080 Hb_000676_290--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_000676_290--Hb_000087_020 Hb_005398_030 Hb_005398_030 Hb_000676_290--Hb_005398_030 Hb_010180_020 Hb_010180_020 Hb_000676_290--Hb_010180_020 Hb_071130_030 Hb_071130_030 Hb_000676_290--Hb_071130_030 Hb_000023_140 Hb_000023_140 Hb_002616_050--Hb_000023_140 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_004128_190--Hb_002078_150 Hb_004128_190--Hb_003847_080 Hb_000245_130 Hb_000245_130 Hb_004128_190--Hb_000245_130 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_012305_050 Hb_012305_050 Hb_004128_190--Hb_012305_050 Hb_004128_190--Hb_000024_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.8923 7.38802 12.0293 39.4813 47.7109 81.0038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.7218 61.0097 46.2401 17.3226 19.4037

CAGE analysis