Hb_008406_140

Information

Type transcription factor
Description TF Family: SBP
Location Contig8406: 97331-100200
Sequence    

Annotation

kegg
ID rcu:RCOM_1173370
description Squamosa promoter-binding protein, putative
nr
ID XP_002517882.1
description Squamosa promoter-binding protein, putative [Ricinus communis]
swissprot
ID Q9S7A9
description Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1
trembl
ID B9RVW3
description Squamosa promoter-binding protein, putative OS=Ricinus communis GN=RCOM_1173370 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60116: 97714-99834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_140 0.0 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
2 Hb_000197_210 0.0903519065 - - phosphatidylinositol transporter, putative [Ricinus communis]
3 Hb_018954_020 0.1001540273 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
4 Hb_001279_330 0.1011159062 - - Protein bem46, putative [Ricinus communis]
5 Hb_000199_080 0.1020327813 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002159_040 0.1041045183 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
7 Hb_003716_020 0.1069206432 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
8 Hb_001040_120 0.1084274823 - - allantoinase, putative [Ricinus communis]
9 Hb_079326_010 0.1085404334 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
10 Hb_000497_230 0.1088917932 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
11 Hb_000797_050 0.1108011047 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
12 Hb_011497_010 0.1112393157 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
13 Hb_001863_110 0.1128402338 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_004218_070 0.1128444667 - - annexin [Manihot esculenta]
15 Hb_003006_060 0.1136745494 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
16 Hb_004881_050 0.1137938983 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
17 Hb_015763_030 0.114433232 - - conserved hypothetical protein [Ricinus communis]
18 Hb_173178_020 0.1159303232 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
19 Hb_007668_040 0.1163492042 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
20 Hb_000424_230 0.1177625684 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]

Gene co-expression network

sample Hb_008406_140 Hb_008406_140 Hb_000197_210 Hb_000197_210 Hb_008406_140--Hb_000197_210 Hb_018954_020 Hb_018954_020 Hb_008406_140--Hb_018954_020 Hb_001279_330 Hb_001279_330 Hb_008406_140--Hb_001279_330 Hb_000199_080 Hb_000199_080 Hb_008406_140--Hb_000199_080 Hb_002159_040 Hb_002159_040 Hb_008406_140--Hb_002159_040 Hb_003716_020 Hb_003716_020 Hb_008406_140--Hb_003716_020 Hb_000042_270 Hb_000042_270 Hb_000197_210--Hb_000042_270 Hb_000236_380 Hb_000236_380 Hb_000197_210--Hb_000236_380 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_000497_230 Hb_000497_230 Hb_000197_210--Hb_000497_230 Hb_006816_390 Hb_006816_390 Hb_000197_210--Hb_006816_390 Hb_018954_020--Hb_000497_230 Hb_018954_020--Hb_002159_040 Hb_000566_100 Hb_000566_100 Hb_018954_020--Hb_000566_100 Hb_018954_020--Hb_000197_210 Hb_002235_130 Hb_002235_130 Hb_018954_020--Hb_002235_130 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_000424_230 Hb_000424_230 Hb_001279_330--Hb_000424_230 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_005368_010 Hb_005368_010 Hb_001279_330--Hb_005368_010 Hb_005271_080 Hb_005271_080 Hb_001279_330--Hb_005271_080 Hb_007668_020 Hb_007668_020 Hb_000199_080--Hb_007668_020 Hb_000199_080--Hb_007757_100 Hb_079326_010 Hb_079326_010 Hb_000199_080--Hb_079326_010 Hb_003581_020 Hb_003581_020 Hb_000199_080--Hb_003581_020 Hb_000199_080--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_002159_040--Hb_000244_240 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_004143_070 Hb_004143_070 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490 Hb_003716_020--Hb_011497_010 Hb_003716_020--Hb_007668_020 Hb_003716_020--Hb_003581_020 Hb_005000_270 Hb_005000_270 Hb_003716_020--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_003716_020--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_003716_020--Hb_006002_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2458 5.60243 8.10175 12.6583 21.3667 30.3129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.89182 5.88574 8.29949 7.84394 4.06509

CAGE analysis