Hb_002235_130

Information

Type -
Description -
Location Contig2235: 72783-76628
Sequence    

Annotation

kegg
ID rcu:RCOM_0538460
description hypothetical protein
nr
ID XP_002530022.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVK3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0538460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23210: 75006-78182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_018954_020 0.1117834775 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
3 Hb_008406_140 0.1313382083 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
4 Hb_000497_230 0.1359319932 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
5 Hb_003376_050 0.1439556483 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
6 Hb_005271_080 0.144990022 - - receptor kinase, putative [Ricinus communis]
7 Hb_001279_330 0.1457708797 - - Protein bem46, putative [Ricinus communis]
8 Hb_001501_060 0.1463999396 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009485_020 0.1464125425 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
10 Hb_004218_070 0.1517808182 - - annexin [Manihot esculenta]
11 Hb_000197_210 0.1538107341 - - phosphatidylinositol transporter, putative [Ricinus communis]
12 Hb_162378_010 0.1539828708 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
13 Hb_003858_040 0.1549424719 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
14 Hb_000544_180 0.1549580478 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
15 Hb_000566_100 0.162790093 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
16 Hb_001396_280 0.1647791384 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
17 Hb_000392_370 0.1649323798 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
18 Hb_000797_050 0.1667619555 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
19 Hb_000189_510 0.1711329575 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
20 Hb_004375_130 0.1711652957 - - kinesin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_002235_130 Hb_002235_130 Hb_018954_020 Hb_018954_020 Hb_002235_130--Hb_018954_020 Hb_008406_140 Hb_008406_140 Hb_002235_130--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_002235_130--Hb_000497_230 Hb_003376_050 Hb_003376_050 Hb_002235_130--Hb_003376_050 Hb_005271_080 Hb_005271_080 Hb_002235_130--Hb_005271_080 Hb_001279_330 Hb_001279_330 Hb_002235_130--Hb_001279_330 Hb_018954_020--Hb_000497_230 Hb_002159_040 Hb_002159_040 Hb_018954_020--Hb_002159_040 Hb_018954_020--Hb_008406_140 Hb_000566_100 Hb_000566_100 Hb_018954_020--Hb_000566_100 Hb_000197_210 Hb_000197_210 Hb_018954_020--Hb_000197_210 Hb_008406_140--Hb_000197_210 Hb_008406_140--Hb_001279_330 Hb_000199_080 Hb_000199_080 Hb_008406_140--Hb_000199_080 Hb_008406_140--Hb_002159_040 Hb_003716_020 Hb_003716_020 Hb_008406_140--Hb_003716_020 Hb_000497_230--Hb_000197_210 Hb_000497_230--Hb_008406_140 Hb_000497_230--Hb_001279_330 Hb_004143_070 Hb_004143_070 Hb_000497_230--Hb_004143_070 Hb_000497_230--Hb_002159_040 Hb_002942_060 Hb_002942_060 Hb_003376_050--Hb_002942_060 Hb_000797_050 Hb_000797_050 Hb_003376_050--Hb_000797_050 Hb_000606_080 Hb_000606_080 Hb_003376_050--Hb_000606_080 Hb_000649_050 Hb_000649_050 Hb_003376_050--Hb_000649_050 Hb_003376_050--Hb_000197_210 Hb_004375_130 Hb_004375_130 Hb_003376_050--Hb_004375_130 Hb_005271_080--Hb_001279_330 Hb_005368_010 Hb_005368_010 Hb_005271_080--Hb_005368_010 Hb_000424_230 Hb_000424_230 Hb_005271_080--Hb_000424_230 Hb_001689_020 Hb_001689_020 Hb_005271_080--Hb_001689_020 Hb_005271_080--Hb_000197_210 Hb_000261_520 Hb_000261_520 Hb_005271_080--Hb_000261_520 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_001279_330--Hb_000424_230 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_001279_330--Hb_005368_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7739 1.06379 4.68614 10.4454 10.2133 11.9096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.78246 1.68215 2.2412 3.08986 2.18531

CAGE analysis