Hb_005271_080

Information

Type -
Description -
Location Contig5271: 49117-54772
Sequence    

Annotation

kegg
ID rcu:RCOM_1686340
description receptor kinase, putative (EC:1.3.1.74)
nr
ID XP_002509777.1
description receptor kinase, putative [Ricinus communis]
swissprot
ID C0LGH8
description Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=2 SV=1
trembl
ID B9RC93
description Receptor kinase, putative OS=Ricinus communis GN=RCOM_1686340 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at1g63430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47051: 49126-54593 , PASA_asmbl_47053: 50168-54593 , PASA_asmbl_47054: 54073-54215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_080 0.0 - - receptor kinase, putative [Ricinus communis]
2 Hb_001279_330 0.0996258095 - - Protein bem46, putative [Ricinus communis]
3 Hb_005368_010 0.1047681087 - - PREDICTED: umecyanin-like [Jatropha curcas]
4 Hb_000424_230 0.1075736926 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
5 Hb_001689_020 0.1143879164 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
6 Hb_000197_210 0.1276030773 - - phosphatidylinositol transporter, putative [Ricinus communis]
7 Hb_000261_520 0.1311431691 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
8 Hb_000915_110 0.1341410775 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
9 Hb_000497_230 0.1353320933 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
10 Hb_000199_080 0.140104409 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000392_370 0.1403531898 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
12 Hb_079326_010 0.1430908349 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
13 Hb_008406_140 0.1433761231 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
14 Hb_002235_130 0.144990022 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002070_070 0.1453741039 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000375_030 0.1464476292 - - -
17 Hb_015763_030 0.1465286103 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001863_110 0.1465960472 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_015026_060 0.1469458216 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
20 Hb_091384_010 0.1473281397 - - hypothetical protein JCGZ_09207 [Jatropha curcas]

Gene co-expression network

sample Hb_005271_080 Hb_005271_080 Hb_001279_330 Hb_001279_330 Hb_005271_080--Hb_001279_330 Hb_005368_010 Hb_005368_010 Hb_005271_080--Hb_005368_010 Hb_000424_230 Hb_000424_230 Hb_005271_080--Hb_000424_230 Hb_001689_020 Hb_001689_020 Hb_005271_080--Hb_001689_020 Hb_000197_210 Hb_000197_210 Hb_005271_080--Hb_000197_210 Hb_000261_520 Hb_000261_520 Hb_005271_080--Hb_000261_520 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_001279_330--Hb_000424_230 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_001279_330--Hb_005368_010 Hb_008406_140 Hb_008406_140 Hb_001279_330--Hb_008406_140 Hb_005368_010--Hb_000424_230 Hb_079326_010 Hb_079326_010 Hb_005368_010--Hb_079326_010 Hb_001341_050 Hb_001341_050 Hb_005368_010--Hb_001341_050 Hb_000116_170 Hb_000116_170 Hb_005368_010--Hb_000116_170 Hb_000424_230--Hb_001689_020 Hb_015763_030 Hb_015763_030 Hb_000424_230--Hb_015763_030 Hb_002942_080 Hb_002942_080 Hb_000424_230--Hb_002942_080 Hb_007668_040 Hb_007668_040 Hb_000424_230--Hb_007668_040 Hb_002671_100 Hb_002671_100 Hb_001689_020--Hb_002671_100 Hb_005016_170 Hb_005016_170 Hb_001689_020--Hb_005016_170 Hb_000123_090 Hb_000123_090 Hb_001689_020--Hb_000123_090 Hb_001341_120 Hb_001341_120 Hb_001689_020--Hb_001341_120 Hb_028390_010 Hb_028390_010 Hb_001689_020--Hb_028390_010 Hb_000042_270 Hb_000042_270 Hb_000197_210--Hb_000042_270 Hb_000236_380 Hb_000236_380 Hb_000197_210--Hb_000236_380 Hb_000197_210--Hb_008406_140 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_000497_230 Hb_000497_230 Hb_000197_210--Hb_000497_230 Hb_006816_390 Hb_006816_390 Hb_000197_210--Hb_006816_390 Hb_000755_080 Hb_000755_080 Hb_000261_520--Hb_000755_080 Hb_000375_030 Hb_000375_030 Hb_000261_520--Hb_000375_030 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000640_220 Hb_000640_220 Hb_000261_520--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000261_520--Hb_005895_040 Hb_004376_030 Hb_004376_030 Hb_000261_520--Hb_004376_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.9543 5.11484 13.3272 31.697 60.3708 49.1889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4947 12.9751 10.7591 8.78994 10.9399

CAGE analysis