Hb_000375_030

Information

Type -
Description -
Location Contig375: 35981-44290
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38246: 36032-37407
cDNA
(Sanger)
(ID:Location)		 019_M19.ab1: 36032-36721 , 028_E01.ab1: 36032-36723 , 046_N06.ab1: 36032-36676

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_030 0.0 - - -
2 Hb_000261_520 0.0757610945 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
3 Hb_000640_220 0.0822994558 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
4 Hb_005895_040 0.0932388303 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
5 Hb_005408_020 0.0937460203 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002477_130 0.0944683548 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009151_020 0.0948835351 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
8 Hb_073973_160 0.1003152358 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
9 Hb_000365_140 0.100758106 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
10 Hb_000933_020 0.1034023052 - - conserved hypothetical protein [Ricinus communis]
11 Hb_091384_010 0.104491445 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
12 Hb_000029_320 0.1044956153 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
13 Hb_001910_020 0.1048182391 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
14 Hb_004376_030 0.1054732744 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
15 Hb_000640_020 0.1075548634 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
16 Hb_001771_120 0.1090780775 - - K+ transport growth defect-like protein [Hevea brasiliensis]
17 Hb_000031_290 0.1107072912 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
18 Hb_004701_030 0.1115328237 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
19 Hb_000755_080 0.1129964019 - - hypothetical protein RCOM_1016710 [Ricinus communis]
20 Hb_000613_100 0.1137465699 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000375_030 Hb_000375_030 Hb_000261_520 Hb_000261_520 Hb_000375_030--Hb_000261_520 Hb_000640_220 Hb_000640_220 Hb_000375_030--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000375_030--Hb_005895_040 Hb_005408_020 Hb_005408_020 Hb_000375_030--Hb_005408_020 Hb_002477_130 Hb_002477_130 Hb_000375_030--Hb_002477_130 Hb_009151_020 Hb_009151_020 Hb_000375_030--Hb_009151_020 Hb_000755_080 Hb_000755_080 Hb_000261_520--Hb_000755_080 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000261_520--Hb_000640_220 Hb_000261_520--Hb_005895_040 Hb_004376_030 Hb_004376_030 Hb_000261_520--Hb_004376_030 Hb_021422_010 Hb_021422_010 Hb_000640_220--Hb_021422_010 Hb_000640_220--Hb_002477_130 Hb_000104_080 Hb_000104_080 Hb_000640_220--Hb_000104_080 Hb_001584_290 Hb_001584_290 Hb_000640_220--Hb_001584_290 Hb_000365_140 Hb_000365_140 Hb_000640_220--Hb_000365_140 Hb_003126_100 Hb_003126_100 Hb_000640_220--Hb_003126_100 Hb_000422_140 Hb_000422_140 Hb_005895_040--Hb_000422_140 Hb_005895_040--Hb_009151_020 Hb_005895_040--Hb_002477_130 Hb_004656_060 Hb_004656_060 Hb_005895_040--Hb_004656_060 Hb_004701_030 Hb_004701_030 Hb_005895_040--Hb_004701_030 Hb_002499_070 Hb_002499_070 Hb_005895_040--Hb_002499_070 Hb_002307_350 Hb_002307_350 Hb_005408_020--Hb_002307_350 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_000914_080 Hb_000914_080 Hb_005408_020--Hb_000914_080 Hb_008725_130 Hb_008725_130 Hb_005408_020--Hb_008725_130 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_002477_130--Hb_000365_140 Hb_000424_010 Hb_000424_010 Hb_002477_130--Hb_000424_010 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120 Hb_000347_570 Hb_000347_570 Hb_009151_020--Hb_000347_570 Hb_020665_030 Hb_020665_030 Hb_009151_020--Hb_020665_030 Hb_000329_130 Hb_000329_130 Hb_009151_020--Hb_000329_130 Hb_001178_150 Hb_001178_150 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_009151_020--Hb_000914_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.1896 50.6255 37.6971 51.4627 131.099 101.516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6164 30.8984 27.908 18.5993 20.4842

CAGE analysis