Hb_003376_050

Information

Type -
Description -
Location Contig3376: 38599-43349
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13330g
description hypothetical protein
nr
ID XP_012082298.1
description PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067K9V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16469 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35322: 38607-42369 , PASA_asmbl_35323: 42379-42795 , PASA_asmbl_35324: 42371-43157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_050 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
2 Hb_002942_060 0.0959999812 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_000797_050 0.0993904461 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
4 Hb_000606_080 0.10702462 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
5 Hb_000649_050 0.1070465005 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
6 Hb_000197_210 0.110424109 - - phosphatidylinositol transporter, putative [Ricinus communis]
7 Hb_004375_130 0.1125625915 - - kinesin heavy chain, putative [Ricinus communis]
8 Hb_000392_370 0.1133011178 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
9 Hb_009049_020 0.1148299855 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
10 Hb_000189_510 0.1175800544 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
11 Hb_000606_090 0.1193150432 - - Far upstream element-binding protein, putative [Ricinus communis]
12 Hb_000208_260 0.1198084522 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
13 Hb_058999_030 0.1246564726 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
14 Hb_000915_110 0.125104152 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
15 Hb_002836_140 0.1269487876 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
16 Hb_000010_090 0.1279033619 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
17 Hb_004705_040 0.1321315958 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
18 Hb_000299_040 0.1323470674 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
19 Hb_000554_010 0.1324308748 - - transporter, putative [Ricinus communis]
20 Hb_002750_050 0.1325491987 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]

Gene co-expression network

sample Hb_003376_050 Hb_003376_050 Hb_002942_060 Hb_002942_060 Hb_003376_050--Hb_002942_060 Hb_000797_050 Hb_000797_050 Hb_003376_050--Hb_000797_050 Hb_000606_080 Hb_000606_080 Hb_003376_050--Hb_000606_080 Hb_000649_050 Hb_000649_050 Hb_003376_050--Hb_000649_050 Hb_000197_210 Hb_000197_210 Hb_003376_050--Hb_000197_210 Hb_004375_130 Hb_004375_130 Hb_003376_050--Hb_004375_130 Hb_002398_030 Hb_002398_030 Hb_002942_060--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_002942_060--Hb_000445_050 Hb_008120_030 Hb_008120_030 Hb_002942_060--Hb_008120_030 Hb_000208_260 Hb_000208_260 Hb_002942_060--Hb_000208_260 Hb_058999_030 Hb_058999_030 Hb_002942_060--Hb_058999_030 Hb_007592_030 Hb_007592_030 Hb_002942_060--Hb_007592_030 Hb_008556_030 Hb_008556_030 Hb_000797_050--Hb_008556_030 Hb_001444_010 Hb_001444_010 Hb_000797_050--Hb_001444_010 Hb_000480_010 Hb_000480_010 Hb_000797_050--Hb_000480_010 Hb_000679_130 Hb_000679_130 Hb_000797_050--Hb_000679_130 Hb_135377_010 Hb_135377_010 Hb_000797_050--Hb_135377_010 Hb_001983_030 Hb_001983_030 Hb_000797_050--Hb_001983_030 Hb_002067_120 Hb_002067_120 Hb_000606_080--Hb_002067_120 Hb_041392_010 Hb_041392_010 Hb_000606_080--Hb_041392_010 Hb_003502_080 Hb_003502_080 Hb_000606_080--Hb_003502_080 Hb_000606_080--Hb_000197_210 Hb_000679_150 Hb_000679_150 Hb_000606_080--Hb_000679_150 Hb_006951_020 Hb_006951_020 Hb_000606_080--Hb_006951_020 Hb_003641_050 Hb_003641_050 Hb_000649_050--Hb_003641_050 Hb_000922_330 Hb_000922_330 Hb_000649_050--Hb_000922_330 Hb_002681_050 Hb_002681_050 Hb_000649_050--Hb_002681_050 Hb_001100_050 Hb_001100_050 Hb_000649_050--Hb_001100_050 Hb_007477_080 Hb_007477_080 Hb_000649_050--Hb_007477_080 Hb_000042_270 Hb_000042_270 Hb_000197_210--Hb_000042_270 Hb_000236_380 Hb_000236_380 Hb_000197_210--Hb_000236_380 Hb_008406_140 Hb_008406_140 Hb_000197_210--Hb_008406_140 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_000497_230 Hb_000497_230 Hb_000197_210--Hb_000497_230 Hb_006816_390 Hb_006816_390 Hb_000197_210--Hb_006816_390 Hb_000554_010 Hb_000554_010 Hb_004375_130--Hb_000554_010 Hb_002769_020 Hb_002769_020 Hb_004375_130--Hb_002769_020 Hb_000096_080 Hb_000096_080 Hb_004375_130--Hb_000096_080 Hb_000392_370 Hb_000392_370 Hb_004375_130--Hb_000392_370 Hb_004705_040 Hb_004705_040 Hb_004375_130--Hb_004705_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3549 3.49618 14.8486 21.5983 18.415 31.6295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5637 7.45695 12.6926 7.12872 10.7456

CAGE analysis