Hb_000392_370

Information

Type -
Description -
Location Contig392: 300463-306688
Sequence    

Annotation

kegg
ID rcu:RCOM_1514300
description calmodulin binding protein, putative
nr
ID XP_012080227.1
description PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
swissprot
ID Q8L4D8
description Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
trembl
ID A0A067K555
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11598 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein iq-domain 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39278: 299886-306071 , PASA_asmbl_39279: 301660-301896 , PASA_asmbl_39280: 302028-302267 , PASA_asmbl_39282: 306454-306650
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_370 0.0 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
2 Hb_017295_010 0.0812293703 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
3 Hb_002750_050 0.0822935118 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
4 Hb_058999_030 0.0856637763 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
5 Hb_001584_370 0.0903317122 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
6 Hb_003430_090 0.0921572455 - - ATP binding protein, putative [Ricinus communis]
7 Hb_001396_280 0.095479945 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
8 Hb_000915_110 0.1013378427 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
9 Hb_008103_040 0.1020821721 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
10 Hb_009529_030 0.1023482702 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
11 Hb_007592_030 0.1033744285 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_002836_140 0.1036551813 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
13 Hb_007426_150 0.1046608455 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
14 Hb_009049_020 0.1050164605 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
15 Hb_000556_150 0.1057331479 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
16 Hb_000915_080 0.1065299238 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
17 Hb_001541_090 0.108866099 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_004659_020 0.1099089687 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
19 Hb_000208_260 0.1100736971 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
20 Hb_013726_080 0.1101651799 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_000392_370 Hb_000392_370 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_002750_050 Hb_002750_050 Hb_000392_370--Hb_002750_050 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_001584_370 Hb_001584_370 Hb_000392_370--Hb_001584_370 Hb_003430_090 Hb_003430_090 Hb_000392_370--Hb_003430_090 Hb_001396_280 Hb_001396_280 Hb_000392_370--Hb_001396_280 Hb_000107_210 Hb_000107_210 Hb_017295_010--Hb_000107_210 Hb_009529_030 Hb_009529_030 Hb_017295_010--Hb_009529_030 Hb_005227_010 Hb_005227_010 Hb_017295_010--Hb_005227_010 Hb_000008_270 Hb_000008_270 Hb_017295_010--Hb_000008_270 Hb_002273_120 Hb_002273_120 Hb_017295_010--Hb_002273_120 Hb_001109_060 Hb_001109_060 Hb_017295_010--Hb_001109_060 Hb_002750_050--Hb_003430_090 Hb_041290_010 Hb_041290_010 Hb_002750_050--Hb_041290_010 Hb_000207_190 Hb_000207_190 Hb_002750_050--Hb_000207_190 Hb_013726_080 Hb_013726_080 Hb_002750_050--Hb_013726_080 Hb_000915_110 Hb_000915_110 Hb_002750_050--Hb_000915_110 Hb_002398_030 Hb_002398_030 Hb_058999_030--Hb_002398_030 Hb_002248_110 Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_017700_010 Hb_017700_010 Hb_058999_030--Hb_017700_010 Hb_003549_090 Hb_003549_090 Hb_058999_030--Hb_003549_090 Hb_000208_260 Hb_000208_260 Hb_058999_030--Hb_000208_260 Hb_007592_030 Hb_007592_030 Hb_058999_030--Hb_007592_030 Hb_000021_040 Hb_000021_040 Hb_001584_370--Hb_000021_040 Hb_000002_490 Hb_000002_490 Hb_001584_370--Hb_000002_490 Hb_002249_120 Hb_002249_120 Hb_001584_370--Hb_002249_120 Hb_007426_150 Hb_007426_150 Hb_001584_370--Hb_007426_150 Hb_000933_020 Hb_000933_020 Hb_001584_370--Hb_000933_020 Hb_003430_090--Hb_013726_080 Hb_003430_090--Hb_000207_190 Hb_003430_090--Hb_041290_010 Hb_000915_080 Hb_000915_080 Hb_003430_090--Hb_000915_080 Hb_029866_100 Hb_029866_100 Hb_001396_280--Hb_029866_100 Hb_028308_010 Hb_028308_010 Hb_001396_280--Hb_028308_010 Hb_029904_020 Hb_029904_020 Hb_001396_280--Hb_029904_020 Hb_000031_280 Hb_000031_280 Hb_001396_280--Hb_000031_280 Hb_009049_020 Hb_009049_020 Hb_001396_280--Hb_009049_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.2279 23.3407 52.2354 81.8429 98.2322 84.8032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.8887 21.6603 35.196 27.9632 42.0724

CAGE analysis