Hb_000207_190

Information

Type -
Description -
Location Contig207: 278778-292481
Sequence    

Annotation

kegg
ID rcu:RCOM_0686140
description hypothetical protein
nr
ID XP_012069754.1
description PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LFD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21322: 278499-278708 , PASA_asmbl_21323: 278716-288087 , PASA_asmbl_21325: 288091-292328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_190 0.0 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
2 Hb_003430_090 0.0935371015 - - ATP binding protein, putative [Ricinus communis]
3 Hb_002750_050 0.1015708112 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
4 Hb_000853_260 0.1017872711 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
5 Hb_001584_370 0.1188048083 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
6 Hb_000392_370 0.120575926 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
7 Hb_002805_060 0.1297149581 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
8 Hb_013726_080 0.1310819263 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
9 Hb_041290_010 0.1392932426 - - thioredoxin family protein [Populus trichocarpa]
10 Hb_000103_310 0.1422701354 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
11 Hb_017295_010 0.1491133791 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
12 Hb_000365_100 0.1508956032 - - PREDICTED: probable galacturonosyltransferase 7 isoform X1 [Jatropha curcas]
13 Hb_000915_080 0.1512641023 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
14 Hb_002539_110 0.1542579327 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
15 Hb_005463_130 0.1559034439 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
16 Hb_002681_170 0.1578114573 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
17 Hb_002248_110 0.1597162302 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
18 Hb_000556_150 0.1603382619 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
19 Hb_162275_040 0.1649488397 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000915_110 0.1652321366 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]

Gene co-expression network

sample Hb_000207_190 Hb_000207_190 Hb_003430_090 Hb_003430_090 Hb_000207_190--Hb_003430_090 Hb_002750_050 Hb_002750_050 Hb_000207_190--Hb_002750_050 Hb_000853_260 Hb_000853_260 Hb_000207_190--Hb_000853_260 Hb_001584_370 Hb_001584_370 Hb_000207_190--Hb_001584_370 Hb_000392_370 Hb_000392_370 Hb_000207_190--Hb_000392_370 Hb_002805_060 Hb_002805_060 Hb_000207_190--Hb_002805_060 Hb_003430_090--Hb_002750_050 Hb_013726_080 Hb_013726_080 Hb_003430_090--Hb_013726_080 Hb_003430_090--Hb_000392_370 Hb_041290_010 Hb_041290_010 Hb_003430_090--Hb_041290_010 Hb_000915_080 Hb_000915_080 Hb_003430_090--Hb_000915_080 Hb_002750_050--Hb_000392_370 Hb_002750_050--Hb_041290_010 Hb_002750_050--Hb_013726_080 Hb_000915_110 Hb_000915_110 Hb_002750_050--Hb_000915_110 Hb_000853_260--Hb_000392_370 Hb_000853_260--Hb_001584_370 Hb_000556_150 Hb_000556_150 Hb_000853_260--Hb_000556_150 Hb_000853_260--Hb_003430_090 Hb_002092_110 Hb_002092_110 Hb_000853_260--Hb_002092_110 Hb_001584_370--Hb_000392_370 Hb_000021_040 Hb_000021_040 Hb_001584_370--Hb_000021_040 Hb_000002_490 Hb_000002_490 Hb_001584_370--Hb_000002_490 Hb_002249_120 Hb_002249_120 Hb_001584_370--Hb_002249_120 Hb_007426_150 Hb_007426_150 Hb_001584_370--Hb_007426_150 Hb_000933_020 Hb_000933_020 Hb_001584_370--Hb_000933_020 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_001396_280 Hb_001396_280 Hb_000392_370--Hb_001396_280 Hb_027380_030 Hb_027380_030 Hb_002805_060--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_002805_060--Hb_002092_100 Hb_000599_170 Hb_000599_170 Hb_002805_060--Hb_000599_170 Hb_003894_040 Hb_003894_040 Hb_002805_060--Hb_003894_040 Hb_002681_170 Hb_002681_170 Hb_002805_060--Hb_002681_170 Hb_002896_060 Hb_002896_060 Hb_002805_060--Hb_002896_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.51499 3.76309 11.6748 14.1133 22.5432 14.0589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2532 2.87827 5.46657 3.10665 10.1314

CAGE analysis