Hb_002805_060

Information

Type -
Description -
Location Contig2805: 63105-68614
Sequence    

Annotation

kegg
ID rcu:RCOM_0833830
description Minor histocompatibility antigen H13, putative
nr
ID XP_012065910.1
description PREDICTED: signal peptide peptidase [Jatropha curcas]
swissprot
ID O81062
description Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1
trembl
ID A0A067LFK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22822 PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptide peptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29278: 62782-66379 , PASA_asmbl_29279: 66388-66831 , PASA_asmbl_29280: 68171-68624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_060 0.0 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
2 Hb_027380_030 0.0670676084 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
3 Hb_002092_100 0.0801579285 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
4 Hb_000599_170 0.0808206238 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
5 Hb_003894_040 0.0876926306 - - nucleotide binding protein, putative [Ricinus communis]
6 Hb_002681_170 0.0899931049 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
7 Hb_002896_060 0.0926823073 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
8 Hb_013726_080 0.0962990448 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
9 Hb_001051_090 0.1057616132 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
10 Hb_003104_040 0.1059349633 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
11 Hb_000608_350 0.1061159419 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
12 Hb_001301_220 0.1064066658 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
13 Hb_000915_080 0.1079935057 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
14 Hb_000453_140 0.1088698082 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
15 Hb_005053_010 0.1092793384 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
16 Hb_003430_090 0.1108070518 - - ATP binding protein, putative [Ricinus communis]
17 Hb_006915_020 0.1110186158 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
18 Hb_003687_210 0.1115037424 - - PREDICTED: malate dehydrogenase [Populus euphratica]
19 Hb_000579_060 0.1146161158 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
20 Hb_002539_110 0.1168820622 - - hypothetical protein JCGZ_15697 [Jatropha curcas]

Gene co-expression network

sample Hb_002805_060 Hb_002805_060 Hb_027380_030 Hb_027380_030 Hb_002805_060--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_002805_060--Hb_002092_100 Hb_000599_170 Hb_000599_170 Hb_002805_060--Hb_000599_170 Hb_003894_040 Hb_003894_040 Hb_002805_060--Hb_003894_040 Hb_002681_170 Hb_002681_170 Hb_002805_060--Hb_002681_170 Hb_002896_060 Hb_002896_060 Hb_002805_060--Hb_002896_060 Hb_027380_030--Hb_000599_170 Hb_027380_030--Hb_002896_060 Hb_001051_090 Hb_001051_090 Hb_027380_030--Hb_001051_090 Hb_000453_140 Hb_000453_140 Hb_027380_030--Hb_000453_140 Hb_006915_020 Hb_006915_020 Hb_027380_030--Hb_006915_020 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090 Hb_002092_100--Hb_002681_170 Hb_000599_170--Hb_003894_040 Hb_000599_170--Hb_001051_090 Hb_000599_170--Hb_006915_020 Hb_000599_170--Hb_002092_100 Hb_018202_050 Hb_018202_050 Hb_003894_040--Hb_018202_050 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_003894_040--Hb_006915_020 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_000031_280 Hb_000031_280 Hb_002681_170--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_002681_170--Hb_008556_030 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210 Hb_002896_060--Hb_001051_090 Hb_002896_060--Hb_002092_100 Hb_002896_060--Hb_000453_140 Hb_001952_120 Hb_001952_120 Hb_002896_060--Hb_001952_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7544 13.2279 27.9833 19.4577 34.8514 23.8511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.52397 4.61023 6.06491 10.5664 13.9211

CAGE analysis