Hb_027380_030

Information

Type -
Description -
Location Contig27380: 11658-16767
Sequence    

Annotation

kegg
ID rcu:RCOM_0229980
description Endoplasmic oxidoreductin-1 precursor, putative
nr
ID XP_002534381.1
description Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
swissprot
ID Q9C7S7
description Endoplasmic reticulum oxidoreductin-1 OS=Arabidopsis thaliana GN=AERO1 PE=1 SV=1
trembl
ID B9T812
description Endoplasmic oxidoreductin-1, putative OS=Ricinus communis GN=RCOM_0229980 PE=4 SV=1
Gene Ontology
ID GO:0005783
description endoplasmic reticulum oxidoreductin-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28582: 11883-16722 , PASA_asmbl_28583: 13144-13238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_030 0.0 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
2 Hb_002805_060 0.0670676084 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
3 Hb_000599_170 0.0680463863 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
4 Hb_002896_060 0.0714348837 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
5 Hb_001051_090 0.0819966036 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
6 Hb_000453_140 0.0825133918 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
7 Hb_006915_020 0.0830330188 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
8 Hb_002092_100 0.0831401921 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
9 Hb_003894_040 0.0957540409 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_000265_220 0.1003115716 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
11 Hb_007456_010 0.1058987814 - - hypothetical protein L484_003540 [Morus notabilis]
12 Hb_001301_220 0.1110376971 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
13 Hb_000165_140 0.1112441492 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
14 Hb_003097_080 0.1162474588 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
15 Hb_005408_020 0.1170970509 - - conserved hypothetical protein [Ricinus communis]
16 Hb_016734_090 0.1175216603 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
17 Hb_006831_070 0.1201534973 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
18 Hb_000021_020 0.1206019345 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
19 Hb_011915_010 0.1215189677 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
20 Hb_002681_170 0.122885367 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]

Gene co-expression network

sample Hb_027380_030 Hb_027380_030 Hb_002805_060 Hb_002805_060 Hb_027380_030--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_027380_030--Hb_000599_170 Hb_002896_060 Hb_002896_060 Hb_027380_030--Hb_002896_060 Hb_001051_090 Hb_001051_090 Hb_027380_030--Hb_001051_090 Hb_000453_140 Hb_000453_140 Hb_027380_030--Hb_000453_140 Hb_006915_020 Hb_006915_020 Hb_027380_030--Hb_006915_020 Hb_002092_100 Hb_002092_100 Hb_002805_060--Hb_002092_100 Hb_002805_060--Hb_000599_170 Hb_003894_040 Hb_003894_040 Hb_002805_060--Hb_003894_040 Hb_002681_170 Hb_002681_170 Hb_002805_060--Hb_002681_170 Hb_002805_060--Hb_002896_060 Hb_000599_170--Hb_003894_040 Hb_000599_170--Hb_001051_090 Hb_000599_170--Hb_006915_020 Hb_000599_170--Hb_002092_100 Hb_002896_060--Hb_001051_090 Hb_002896_060--Hb_002092_100 Hb_002896_060--Hb_000453_140 Hb_001952_120 Hb_001952_120 Hb_002896_060--Hb_001952_120 Hb_001051_090--Hb_002805_060 Hb_004223_110 Hb_004223_110 Hb_001051_090--Hb_004223_110 Hb_001051_090--Hb_000453_140 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_000453_140--Hb_002092_100 Hb_000076_260 Hb_000076_260 Hb_000453_140--Hb_000076_260 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_000165_140 Hb_000165_140 Hb_006915_020--Hb_000165_140 Hb_006915_020--Hb_003894_040 Hb_006915_020--Hb_000453_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.207 23.3406 46.1044 23.108 58.9966 33.3601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.2966 6.18489 9.35048 17.7162 13.7707

CAGE analysis