Hb_007456_010

Information

Type -
Description -
Location Contig7456: 12109-16361
Sequence    

Annotation

kegg
ID bfo:BRAFLDRAFT_113908
description hypothetical protein
nr
ID XP_010103222.1
description hypothetical protein L484_003540 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9RTG6
description Uncharacterized protein OS=Morus notabilis GN=L484_003540 PE=4 SV=1
Gene Ontology
ID GO:0005886
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56682: 11946-81564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007456_010 0.0 - - hypothetical protein L484_003540 [Morus notabilis]
2 Hb_000453_140 0.0991409152 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
3 Hb_027380_030 0.1058987814 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
4 Hb_002307_350 0.1105312342 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
5 Hb_006915_020 0.1126556622 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
6 Hb_000021_020 0.1186969321 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
7 Hb_001198_150 0.1201135932 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]
8 Hb_000265_220 0.121111134 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
9 Hb_002092_100 0.1231297593 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
10 Hb_003894_040 0.1245638864 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_002805_060 0.1246553447 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
12 Hb_005408_020 0.1265333128 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001508_020 0.1312112783 - - myosin vIII, putative [Ricinus communis]
14 Hb_000914_080 0.1327652047 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_011915_010 0.1337481065 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
16 Hb_000599_170 0.1343327118 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
17 Hb_002888_070 0.1356548337 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
18 Hb_002681_170 0.1375998916 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
19 Hb_002249_160 0.1392602719 - - -
20 Hb_000086_560 0.1401975352 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007456_010 Hb_007456_010 Hb_000453_140 Hb_000453_140 Hb_007456_010--Hb_000453_140 Hb_027380_030 Hb_027380_030 Hb_007456_010--Hb_027380_030 Hb_002307_350 Hb_002307_350 Hb_007456_010--Hb_002307_350 Hb_006915_020 Hb_006915_020 Hb_007456_010--Hb_006915_020 Hb_000021_020 Hb_000021_020 Hb_007456_010--Hb_000021_020 Hb_001198_150 Hb_001198_150 Hb_007456_010--Hb_001198_150 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_000453_140--Hb_027380_030 Hb_002896_060 Hb_002896_060 Hb_000453_140--Hb_002896_060 Hb_002092_100 Hb_002092_100 Hb_000453_140--Hb_002092_100 Hb_000076_260 Hb_000076_260 Hb_000453_140--Hb_000076_260 Hb_002805_060 Hb_002805_060 Hb_027380_030--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_027380_030--Hb_000599_170 Hb_027380_030--Hb_002896_060 Hb_001051_090 Hb_001051_090 Hb_027380_030--Hb_001051_090 Hb_027380_030--Hb_006915_020 Hb_005408_020 Hb_005408_020 Hb_002307_350--Hb_005408_020 Hb_002249_120 Hb_002249_120 Hb_002307_350--Hb_002249_120 Hb_008725_130 Hb_008725_130 Hb_002307_350--Hb_008725_130 Hb_017895_020 Hb_017895_020 Hb_002307_350--Hb_017895_020 Hb_000914_080 Hb_000914_080 Hb_002307_350--Hb_000914_080 Hb_002307_350--Hb_000021_020 Hb_006915_020--Hb_002092_100 Hb_006915_020--Hb_000021_020 Hb_000165_140 Hb_000165_140 Hb_006915_020--Hb_000165_140 Hb_003894_040 Hb_003894_040 Hb_006915_020--Hb_003894_040 Hb_006915_020--Hb_000453_140 Hb_003529_130 Hb_003529_130 Hb_000021_020--Hb_003529_130 Hb_011609_170 Hb_011609_170 Hb_000021_020--Hb_011609_170 Hb_000021_020--Hb_005408_020 Hb_000021_020--Hb_008725_130 Hb_011915_010 Hb_011915_010 Hb_001198_150--Hb_011915_010 Hb_001198_150--Hb_000914_080 Hb_001102_080 Hb_001102_080 Hb_001198_150--Hb_001102_080 Hb_001198_150--Hb_017895_020 Hb_007044_040 Hb_007044_040 Hb_001198_150--Hb_007044_040 Hb_000922_140 Hb_000922_140 Hb_001198_150--Hb_000922_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.36978 1.59369 4.24525 1.90446 6.16958 4.92674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12022 0.586589 0.47431 2.685 1.30335

CAGE analysis