Hb_000599_170

Information

Type -
Description -
Location Contig599: 150080-159902
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03790g
description POPTRDRAFT_830072; ribophorin 2 family protein
nr
ID XP_011028829.1
description PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
swissprot
ID Q93Z16
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1
trembl
ID B9GRP4
description Ribophorin 2 family protein OS=Populus trichocarpa GN=POPTR_0002s03790g PE=4 SV=1
Gene Ontology
ID GO:0008250
description ribophorin 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50466: 149991-159652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_170 0.0 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
2 Hb_027380_030 0.0680463863 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
3 Hb_002805_060 0.0808206238 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
4 Hb_003894_040 0.0929158391 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_001051_090 0.1002458514 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
6 Hb_006915_020 0.1052288409 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_002092_100 0.1059980847 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
8 Hb_006831_070 0.1062383495 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
9 Hb_000579_060 0.1087366688 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
10 Hb_002291_060 0.1112134794 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
11 Hb_002896_060 0.1133156172 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
12 Hb_000608_350 0.113548539 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
13 Hb_000165_140 0.1165648543 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
14 Hb_000453_140 0.1187883317 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
15 Hb_013818_030 0.1212651081 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004223_110 0.122234289 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
17 Hb_003097_080 0.1243409958 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
18 Hb_000589_190 0.1287953488 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
19 Hb_001301_220 0.1288423609 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
20 Hb_001508_020 0.1330855248 - - myosin vIII, putative [Ricinus communis]

Gene co-expression network

sample Hb_000599_170 Hb_000599_170 Hb_027380_030 Hb_027380_030 Hb_000599_170--Hb_027380_030 Hb_002805_060 Hb_002805_060 Hb_000599_170--Hb_002805_060 Hb_003894_040 Hb_003894_040 Hb_000599_170--Hb_003894_040 Hb_001051_090 Hb_001051_090 Hb_000599_170--Hb_001051_090 Hb_006915_020 Hb_006915_020 Hb_000599_170--Hb_006915_020 Hb_002092_100 Hb_002092_100 Hb_000599_170--Hb_002092_100 Hb_027380_030--Hb_002805_060 Hb_002896_060 Hb_002896_060 Hb_027380_030--Hb_002896_060 Hb_027380_030--Hb_001051_090 Hb_000453_140 Hb_000453_140 Hb_027380_030--Hb_000453_140 Hb_027380_030--Hb_006915_020 Hb_002805_060--Hb_002092_100 Hb_002805_060--Hb_003894_040 Hb_002681_170 Hb_002681_170 Hb_002805_060--Hb_002681_170 Hb_002805_060--Hb_002896_060 Hb_018202_050 Hb_018202_050 Hb_003894_040--Hb_018202_050 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_003894_040--Hb_006915_020 Hb_001051_090--Hb_002896_060 Hb_001051_090--Hb_002805_060 Hb_004223_110 Hb_004223_110 Hb_001051_090--Hb_004223_110 Hb_001051_090--Hb_000453_140 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_000165_140 Hb_000165_140 Hb_006915_020--Hb_000165_140 Hb_006915_020--Hb_000453_140 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090 Hb_002092_100--Hb_002681_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.9013 68.8144 120.69 68.998 126.201 84.8504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6058 12.2356 19.7726 51.0158 39.779

CAGE analysis