Hb_006915_020

Information

Type -
Description -
Location Contig6915: 11680-16588
Sequence    

Annotation

kegg
ID rcu:RCOM_0901410
description formamidopyrimidine-DNA glycosylase, putative (EC:3.2.2.23)
nr
ID XP_012073135.1
description PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
swissprot
ID O80358
description Formamidopyrimidine-DNA glycosylase OS=Arabidopsis thaliana GN=FPG1 PE=1 SV=1
trembl
ID A0A067KPV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06109 PE=4 SV=1
Gene Ontology
ID GO:0003676
description formamidopyrimidine-dna glycosylase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54380: 11862-16589 , PASA_asmbl_54381: 11964-16216 , PASA_asmbl_54382: 15346-15529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006915_020 0.0 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
2 Hb_027380_030 0.0830330188 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
3 Hb_002092_100 0.088117211 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
4 Hb_000021_020 0.0907716433 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
5 Hb_000165_140 0.0965194711 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
6 Hb_003894_040 0.0970562836 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_000453_140 0.1004171114 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
8 Hb_000599_170 0.1052288409 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
9 Hb_011609_170 0.1096450931 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
10 Hb_002805_060 0.1110186158 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
11 Hb_011915_010 0.1110366124 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
12 Hb_007456_010 0.1126556622 - - hypothetical protein L484_003540 [Morus notabilis]
13 Hb_002307_350 0.1134854912 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
14 Hb_003529_130 0.1163846324 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
15 Hb_009265_050 0.1183391779 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
16 Hb_016734_090 0.1193224918 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
17 Hb_002681_170 0.1215298756 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
18 Hb_000661_020 0.1232421664 - - BnaC08g27190D [Brassica napus]
19 Hb_000265_220 0.1236972771 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
20 Hb_001050_010 0.1248274049 - - Advillin [Gossypium arboreum]

Gene co-expression network

sample Hb_006915_020 Hb_006915_020 Hb_027380_030 Hb_027380_030 Hb_006915_020--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_000165_140 Hb_000165_140 Hb_006915_020--Hb_000165_140 Hb_003894_040 Hb_003894_040 Hb_006915_020--Hb_003894_040 Hb_000453_140 Hb_000453_140 Hb_006915_020--Hb_000453_140 Hb_002805_060 Hb_002805_060 Hb_027380_030--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_027380_030--Hb_000599_170 Hb_002896_060 Hb_002896_060 Hb_027380_030--Hb_002896_060 Hb_001051_090 Hb_001051_090 Hb_027380_030--Hb_001051_090 Hb_027380_030--Hb_000453_140 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002092_100--Hb_002805_060 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090 Hb_002681_170 Hb_002681_170 Hb_002092_100--Hb_002681_170 Hb_003529_130 Hb_003529_130 Hb_000021_020--Hb_003529_130 Hb_011609_170 Hb_011609_170 Hb_000021_020--Hb_011609_170 Hb_002307_350 Hb_002307_350 Hb_000021_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_000021_020--Hb_005408_020 Hb_008725_130 Hb_008725_130 Hb_000021_020--Hb_008725_130 Hb_000173_150 Hb_000173_150 Hb_000165_140--Hb_000173_150 Hb_000165_140--Hb_027380_030 Hb_000165_140--Hb_016734_090 Hb_000165_140--Hb_000599_170 Hb_000165_140--Hb_002092_100 Hb_003894_040--Hb_002805_060 Hb_003894_040--Hb_000599_170 Hb_018202_050 Hb_018202_050 Hb_003894_040--Hb_018202_050 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_000453_140--Hb_002896_060 Hb_000453_140--Hb_002092_100 Hb_000076_260 Hb_000076_260 Hb_000453_140--Hb_000076_260 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5025 14.7794 23.6433 12.6773 29.3117 20.2043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.74872 1.75024 4.5378 11.9189 7.74972

CAGE analysis