Hb_003097_080

Information

Type -
Description -
Location Contig3097: 57242-63112
Sequence    

Annotation

kegg
ID mdm:103403391
description FAD synthetase 2, chloroplastic-like
nr
ID KDP40482.1
description hypothetical protein JCGZ_24481 [Jatropha curcas]
swissprot
ID Q8VZR0
description FAD synthetase 2, chloroplastic OS=Arabidopsis thaliana GN=RIBF2 PE=1 SV=1
trembl
ID A0A067KWE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24481 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32718: 57373-59547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_080 0.0 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
2 Hb_000453_140 0.0806318279 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
3 Hb_013818_030 0.1039668301 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027380_030 0.1162474588 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
5 Hb_000076_260 0.1174279094 - - hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
6 Hb_001504_040 0.119868833 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
7 Hb_001307_080 0.1207086041 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
8 Hb_000030_060 0.121597253 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
9 Hb_001301_090 0.1219743828 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000599_170 0.1243409958 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
11 Hb_002805_060 0.1245521042 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
12 Hb_000914_080 0.1259590075 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_002896_060 0.1266023461 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
14 Hb_003894_040 0.1267957432 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_010417_060 0.1273070893 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
16 Hb_002092_100 0.1292916724 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
17 Hb_006915_020 0.1294206814 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
18 Hb_000365_030 0.1315835394 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
19 Hb_012490_060 0.1318833283 - - PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
20 Hb_158604_010 0.1331575615 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003097_080 Hb_003097_080 Hb_000453_140 Hb_000453_140 Hb_003097_080--Hb_000453_140 Hb_013818_030 Hb_013818_030 Hb_003097_080--Hb_013818_030 Hb_027380_030 Hb_027380_030 Hb_003097_080--Hb_027380_030 Hb_000076_260 Hb_000076_260 Hb_003097_080--Hb_000076_260 Hb_001504_040 Hb_001504_040 Hb_003097_080--Hb_001504_040 Hb_001307_080 Hb_001307_080 Hb_003097_080--Hb_001307_080 Hb_000453_140--Hb_027380_030 Hb_002896_060 Hb_002896_060 Hb_000453_140--Hb_002896_060 Hb_002092_100 Hb_002092_100 Hb_000453_140--Hb_002092_100 Hb_000453_140--Hb_000076_260 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010 Hb_032920_130 Hb_032920_130 Hb_013818_030--Hb_032920_130 Hb_132840_100 Hb_132840_100 Hb_013818_030--Hb_132840_100 Hb_010417_060 Hb_010417_060 Hb_013818_030--Hb_010417_060 Hb_001301_090 Hb_001301_090 Hb_013818_030--Hb_001301_090 Hb_158604_010 Hb_158604_010 Hb_013818_030--Hb_158604_010 Hb_002805_060 Hb_002805_060 Hb_027380_030--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_027380_030--Hb_000599_170 Hb_027380_030--Hb_002896_060 Hb_001051_090 Hb_001051_090 Hb_027380_030--Hb_001051_090 Hb_006915_020 Hb_006915_020 Hb_027380_030--Hb_006915_020 Hb_000076_260--Hb_002092_100 Hb_000661_020 Hb_000661_020 Hb_000076_260--Hb_000661_020 Hb_000735_100 Hb_000735_100 Hb_000076_260--Hb_000735_100 Hb_011915_010 Hb_011915_010 Hb_000076_260--Hb_011915_010 Hb_150651_030 Hb_150651_030 Hb_000076_260--Hb_150651_030 Hb_001369_040 Hb_001369_040 Hb_001504_040--Hb_001369_040 Hb_005053_010 Hb_005053_010 Hb_001504_040--Hb_005053_010 Hb_009296_010 Hb_009296_010 Hb_001504_040--Hb_009296_010 Hb_000035_410 Hb_000035_410 Hb_001504_040--Hb_000035_410 Hb_012490_060 Hb_012490_060 Hb_001504_040--Hb_012490_060 Hb_160459_040 Hb_160459_040 Hb_001504_040--Hb_160459_040 Hb_004429_160 Hb_004429_160 Hb_001307_080--Hb_004429_160 Hb_000191_130 Hb_000191_130 Hb_001307_080--Hb_000191_130 Hb_006658_040 Hb_006658_040 Hb_001307_080--Hb_006658_040 Hb_000010_360 Hb_000010_360 Hb_001307_080--Hb_000010_360 Hb_004209_020 Hb_004209_020 Hb_001307_080--Hb_004209_020 Hb_003040_020 Hb_003040_020 Hb_001307_080--Hb_003040_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.84232 1.83854 2.4703 1.91583 5.09946 2.498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.364622 0.688405 0.964648 2.46653 1.55075

CAGE analysis