Hb_001504_040

Information

Type -
Description -
Location Contig1504: 31856-38401
Sequence    

Annotation

kegg
ID rcu:RCOM_0470910
description hypothetical protein
nr
ID XP_012067516.1
description PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
swissprot
ID Q9S9P3
description Factor of DNA methylation 1 OS=Arabidopsis thaliana GN=FDM1 PE=1 SV=1
trembl
ID A0A067LD09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27002 PE=4 SV=1
Gene Ontology
ID GO:0031047
description factor of dna methylation 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12631: 31900-37215 , PASA_asmbl_12633: 35465-35756 , PASA_asmbl_12634: 37699-37886 , PASA_asmbl_12635: 37281-38410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_040 0.0 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
2 Hb_001369_040 0.0539802422 - - PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
3 Hb_005053_010 0.0709236736 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
4 Hb_009296_010 0.0752464308 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
5 Hb_000035_410 0.0819659893 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
6 Hb_012490_060 0.0825023651 - - PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
7 Hb_160459_040 0.0847614615 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
8 Hb_001935_110 0.0847983619 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
9 Hb_012053_080 0.0864614445 - - AP-2 complex subunit alpha, putative [Ricinus communis]
10 Hb_003739_030 0.0865503586 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
11 Hb_000261_030 0.0877891536 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
12 Hb_003104_040 0.0879662187 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
13 Hb_032920_130 0.0894157412 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
14 Hb_009771_110 0.0907589408 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
15 Hb_002078_100 0.0911172998 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
16 Hb_006618_090 0.0913031919 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
17 Hb_000785_040 0.0921038007 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
18 Hb_086287_010 0.0948144973 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
19 Hb_007456_040 0.0948878046 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
20 Hb_011930_080 0.0959446107 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_040 Hb_001504_040 Hb_001369_040 Hb_001369_040 Hb_001504_040--Hb_001369_040 Hb_005053_010 Hb_005053_010 Hb_001504_040--Hb_005053_010 Hb_009296_010 Hb_009296_010 Hb_001504_040--Hb_009296_010 Hb_000035_410 Hb_000035_410 Hb_001504_040--Hb_000035_410 Hb_012490_060 Hb_012490_060 Hb_001504_040--Hb_012490_060 Hb_160459_040 Hb_160459_040 Hb_001504_040--Hb_160459_040 Hb_001935_110 Hb_001935_110 Hb_001369_040--Hb_001935_110 Hb_001369_040--Hb_005053_010 Hb_001427_190 Hb_001427_190 Hb_001369_040--Hb_001427_190 Hb_002078_100 Hb_002078_100 Hb_001369_040--Hb_002078_100 Hb_001369_040--Hb_009296_010 Hb_005053_010--Hb_160459_040 Hb_009771_110 Hb_009771_110 Hb_005053_010--Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_005053_010--Hb_006618_090 Hb_007929_080 Hb_007929_080 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_000470_070 Hb_000470_070 Hb_009296_010--Hb_000470_070 Hb_009296_010--Hb_002078_100 Hb_019654_040 Hb_019654_040 Hb_009296_010--Hb_019654_040 Hb_027380_140 Hb_027380_140 Hb_009296_010--Hb_027380_140 Hb_012053_080 Hb_012053_080 Hb_009296_010--Hb_012053_080 Hb_009296_010--Hb_001935_110 Hb_000261_030 Hb_000261_030 Hb_000035_410--Hb_000261_030 Hb_032920_130 Hb_032920_130 Hb_000035_410--Hb_032920_130 Hb_001235_230 Hb_001235_230 Hb_000035_410--Hb_001235_230 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_002044_170 Hb_002044_170 Hb_000035_410--Hb_002044_170 Hb_150651_030 Hb_150651_030 Hb_012490_060--Hb_150651_030 Hb_005488_150 Hb_005488_150 Hb_012490_060--Hb_005488_150 Hb_000563_130 Hb_000563_130 Hb_012490_060--Hb_000563_130 Hb_012490_060--Hb_012053_080 Hb_002641_130 Hb_002641_130 Hb_012490_060--Hb_002641_130 Hb_160459_040--Hb_009771_110 Hb_160459_040--Hb_012053_080 Hb_160459_040--Hb_000261_030 Hb_002631_140 Hb_002631_140 Hb_160459_040--Hb_002631_140 Hb_028872_070 Hb_028872_070 Hb_160459_040--Hb_028872_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4777 22.4802 28.5696 24.3838 48.2743 43.9322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7801 6.85604 14.6365 31.4498 30.1902

CAGE analysis