Hb_006658_040

Information

Type -
Description -
Location Contig6658: 47002-48151
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19640g
description POPTRDRAFT_762936; hypothetical protein
nr
ID XP_002309355.1
description hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HB37
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s19640g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53240: 27750-47667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006658_040 0.0 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
2 Hb_001307_080 0.0687949908 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
3 Hb_000922_140 0.0789930534 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
4 Hb_000160_350 0.0811870209 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
5 Hb_002157_260 0.0818447421 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
6 Hb_002045_150 0.0852206757 - - histone acetyltransferase gcn5, putative [Ricinus communis]
7 Hb_005965_030 0.085331087 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
8 Hb_000664_070 0.086035078 - - PREDICTED: protein cereblon [Jatropha curcas]
9 Hb_004429_160 0.0868144456 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
10 Hb_023344_010 0.088577159 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
11 Hb_000640_310 0.0894906947 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
12 Hb_001832_130 0.0899586088 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
13 Hb_001427_190 0.0901067287 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
14 Hb_005539_190 0.091129408 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
15 Hb_140049_030 0.0919783266 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
16 Hb_000270_460 0.0927271172 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
17 Hb_000359_120 0.0928179055 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002918_060 0.0937744319 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_005333_160 0.0951080841 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
20 Hb_003040_020 0.0964033726 - - PREDICTED: protein cereblon [Jatropha curcas]

Gene co-expression network

sample Hb_006658_040 Hb_006658_040 Hb_001307_080 Hb_001307_080 Hb_006658_040--Hb_001307_080 Hb_000922_140 Hb_000922_140 Hb_006658_040--Hb_000922_140 Hb_000160_350 Hb_000160_350 Hb_006658_040--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_006658_040--Hb_002157_260 Hb_002045_150 Hb_002045_150 Hb_006658_040--Hb_002045_150 Hb_005965_030 Hb_005965_030 Hb_006658_040--Hb_005965_030 Hb_004429_160 Hb_004429_160 Hb_001307_080--Hb_004429_160 Hb_000191_130 Hb_000191_130 Hb_001307_080--Hb_000191_130 Hb_000010_360 Hb_000010_360 Hb_001307_080--Hb_000010_360 Hb_004209_020 Hb_004209_020 Hb_001307_080--Hb_004209_020 Hb_003040_020 Hb_003040_020 Hb_001307_080--Hb_003040_020 Hb_001953_150 Hb_001953_150 Hb_000922_140--Hb_001953_150 Hb_005332_020 Hb_005332_020 Hb_000922_140--Hb_005332_020 Hb_000922_140--Hb_004429_160 Hb_001427_190 Hb_001427_190 Hb_000922_140--Hb_001427_190 Hb_000922_140--Hb_001307_080 Hb_000160_350--Hb_005965_030 Hb_000640_310 Hb_000640_310 Hb_000160_350--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000160_350--Hb_001799_050 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000771_180 Hb_000771_180 Hb_000160_350--Hb_000771_180 Hb_022256_060 Hb_022256_060 Hb_000160_350--Hb_022256_060 Hb_002157_260--Hb_005965_030 Hb_002157_260--Hb_002045_150 Hb_002157_260--Hb_000160_350 Hb_006452_160 Hb_006452_160 Hb_002157_260--Hb_006452_160 Hb_006960_050 Hb_006960_050 Hb_002157_260--Hb_006960_050 Hb_001408_100 Hb_001408_100 Hb_002157_260--Hb_001408_100 Hb_140049_030 Hb_140049_030 Hb_002045_150--Hb_140049_030 Hb_050847_020 Hb_050847_020 Hb_002045_150--Hb_050847_020 Hb_002045_150--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_002045_150--Hb_000300_360 Hb_002045_150--Hb_006452_160 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_005965_030--Hb_022256_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.46507 6.87768 7.52518 2.91149 10.7948 6.31597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81341 2.82054 2.19487 6.03347 3.64711

CAGE analysis