Hb_005332_020

Information

Type transcription factor
Description TF Family: SNF2
Location Contig5332: 34303-39506
Sequence    

Annotation

kegg
ID rcu:RCOM_0530760
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002526935.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q7XJN0
description DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1
trembl
ID B9SLR6
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0530760 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47435: 34324-35013 , PASA_asmbl_47437: 35550-37083 , PASA_asmbl_47438: 37098-38234 , PASA_asmbl_47439: 38401-38745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_020 0.0 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_001953_150 0.0665901929 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
3 Hb_002422_050 0.0702371593 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
4 Hb_008887_020 0.0707760974 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
5 Hb_000152_260 0.0717388853 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
6 Hb_001143_250 0.073610947 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
7 Hb_002374_260 0.0739788334 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
8 Hb_001799_050 0.0757614689 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
9 Hb_000922_140 0.0771536631 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
10 Hb_007307_020 0.0787490733 - - DNA binding protein, putative [Ricinus communis]
11 Hb_075745_020 0.0807084496 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
12 Hb_022256_060 0.0807399394 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
13 Hb_001545_200 0.081141305 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
14 Hb_000914_120 0.0813042931 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
15 Hb_000963_130 0.0813708788 - - RNA m5u methyltransferase, putative [Ricinus communis]
16 Hb_001427_190 0.0837190543 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
17 Hb_000917_320 0.087976325 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
18 Hb_000160_210 0.089416298 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000796_190 0.0914314035 - - hypothetical protein F383_31148 [Gossypium arboreum]
20 Hb_000679_340 0.0920670109 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005332_020 Hb_005332_020 Hb_001953_150 Hb_001953_150 Hb_005332_020--Hb_001953_150 Hb_002422_050 Hb_002422_050 Hb_005332_020--Hb_002422_050 Hb_008887_020 Hb_008887_020 Hb_005332_020--Hb_008887_020 Hb_000152_260 Hb_000152_260 Hb_005332_020--Hb_000152_260 Hb_001143_250 Hb_001143_250 Hb_005332_020--Hb_001143_250 Hb_002374_260 Hb_002374_260 Hb_005332_020--Hb_002374_260 Hb_000922_140 Hb_000922_140 Hb_001953_150--Hb_000922_140 Hb_080147_040 Hb_080147_040 Hb_001953_150--Hb_080147_040 Hb_001799_050 Hb_001799_050 Hb_001953_150--Hb_001799_050 Hb_001953_150--Hb_001143_250 Hb_000270_460 Hb_000270_460 Hb_001953_150--Hb_000270_460 Hb_001417_050 Hb_001417_050 Hb_002422_050--Hb_001417_050 Hb_004453_110 Hb_004453_110 Hb_002422_050--Hb_004453_110 Hb_001493_040 Hb_001493_040 Hb_002422_050--Hb_001493_040 Hb_002422_050--Hb_000152_260 Hb_000010_360 Hb_000010_360 Hb_002422_050--Hb_000010_360 Hb_022256_060 Hb_022256_060 Hb_008887_020--Hb_022256_060 Hb_000679_340 Hb_000679_340 Hb_008887_020--Hb_000679_340 Hb_027760_080 Hb_027760_080 Hb_008887_020--Hb_027760_080 Hb_000914_120 Hb_000914_120 Hb_008887_020--Hb_000914_120 Hb_000230_090 Hb_000230_090 Hb_008887_020--Hb_000230_090 Hb_002749_110 Hb_002749_110 Hb_000152_260--Hb_002749_110 Hb_001427_190 Hb_001427_190 Hb_000152_260--Hb_001427_190 Hb_160459_040 Hb_160459_040 Hb_000152_260--Hb_160459_040 Hb_000152_260--Hb_002374_260 Hb_003878_110 Hb_003878_110 Hb_000152_260--Hb_003878_110 Hb_000418_140 Hb_000418_140 Hb_001143_250--Hb_000418_140 Hb_003633_070 Hb_003633_070 Hb_001143_250--Hb_003633_070 Hb_001143_250--Hb_001799_050 Hb_002022_070 Hb_002022_070 Hb_001143_250--Hb_002022_070 Hb_007307_020 Hb_007307_020 Hb_001143_250--Hb_007307_020 Hb_001143_250--Hb_027760_080 Hb_002374_260--Hb_003878_110 Hb_003638_090 Hb_003638_090 Hb_002374_260--Hb_003638_090 Hb_002304_060 Hb_002304_060 Hb_002374_260--Hb_002304_060 Hb_001377_110 Hb_001377_110 Hb_002374_260--Hb_001377_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8288 10.6078 10.2789 4.59178 12.1447 14.2185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.34524 6.06894 4.79559 9.31926 9.33347

CAGE analysis