Hb_001301_090

Information

Type -
Description -
Location Contig1301: 82848-85155
Sequence    

Annotation

kegg
ID rcu:RCOM_0585740
description hypothetical protein
nr
ID XP_002522975.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAF6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0585740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09002: 82937-85118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_067193_010 0.087823673 - - -
3 Hb_002044_170 0.0902397823 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
4 Hb_010417_060 0.0905736363 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
5 Hb_005731_090 0.0933255022 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
6 Hb_032920_130 0.0955795402 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
7 Hb_004453_110 0.0978004832 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
8 Hb_000025_650 0.0983079739 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
9 Hb_004701_050 0.0986547536 - - alpha1 family protein [Populus trichocarpa]
10 Hb_008112_030 0.1039313992 - - conserved hypothetical protein [Ricinus communis]
11 Hb_089140_050 0.1044852321 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
12 Hb_013818_030 0.1048339745 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010272_010 0.1054611778 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
14 Hb_000062_470 0.1061796933 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
15 Hb_001031_040 0.1070421351 - - conserved hypothetical protein [Ricinus communis]
16 Hb_132840_100 0.1074382401 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
17 Hb_002044_050 0.1092158567 - - -
18 Hb_000933_020 0.1098828864 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001307_080 0.1105787218 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
20 Hb_007426_150 0.1112096531 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]

Gene co-expression network

sample Hb_001301_090 Hb_001301_090 Hb_067193_010 Hb_067193_010 Hb_001301_090--Hb_067193_010 Hb_002044_170 Hb_002044_170 Hb_001301_090--Hb_002044_170 Hb_010417_060 Hb_010417_060 Hb_001301_090--Hb_010417_060 Hb_005731_090 Hb_005731_090 Hb_001301_090--Hb_005731_090 Hb_032920_130 Hb_032920_130 Hb_001301_090--Hb_032920_130 Hb_004453_110 Hb_004453_110 Hb_001301_090--Hb_004453_110 Hb_001221_150 Hb_001221_150 Hb_067193_010--Hb_001221_150 Hb_067193_010--Hb_005731_090 Hb_000856_140 Hb_000856_140 Hb_067193_010--Hb_000856_140 Hb_001307_080 Hb_001307_080 Hb_067193_010--Hb_001307_080 Hb_067193_010--Hb_004453_110 Hb_003040_020 Hb_003040_020 Hb_067193_010--Hb_003040_020 Hb_001235_230 Hb_001235_230 Hb_002044_170--Hb_001235_230 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_002044_170--Hb_032920_130 Hb_000261_030 Hb_000261_030 Hb_002044_170--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_002044_170--Hb_000176_130 Hb_000035_410 Hb_000035_410 Hb_002044_170--Hb_000035_410 Hb_000062_470 Hb_000062_470 Hb_010417_060--Hb_000062_470 Hb_010417_060--Hb_032920_130 Hb_000917_160 Hb_000917_160 Hb_010417_060--Hb_000917_160 Hb_010417_060--Hb_002044_170 Hb_000191_130 Hb_000191_130 Hb_010417_060--Hb_000191_130 Hb_010417_060--Hb_000176_130 Hb_002174_020 Hb_002174_020 Hb_005731_090--Hb_002174_020 Hb_005731_090--Hb_004453_110 Hb_008112_030 Hb_008112_030 Hb_005731_090--Hb_008112_030 Hb_000160_290 Hb_000160_290 Hb_005731_090--Hb_000160_290 Hb_005731_090--Hb_030627_060 Hb_032920_130--Hb_000261_030 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_032920_130--Hb_001235_230 Hb_000429_220 Hb_000429_220 Hb_004453_110--Hb_000429_220 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_004453_110--Hb_002174_020 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3167 49.4526 33.2614 46.7424 89.8451 58.3913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0261 20.2609 16.2198 28.8897 38.0348

CAGE analysis