Hb_000165_140

Information

Type -
Description -
Location Contig165: 130711-135063
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19270g
description POPTRDRAFT_886511; hypothetical protein
nr
ID XP_011001758.1
description PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
swissprot
ID C0LGQ4
description Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1
trembl
ID B9HSK6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19270g PE=4 SV=2
Gene Ontology
ID GO:0004672
description probable inactive receptor-like protein kinase at3g56050

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15197: 130718-135070 , PASA_asmbl_15198: 130727-131383
cDNA
(Sanger)
(ID:Location)		 003_I02.ab1: 130727-131383

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_140 0.0 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
2 Hb_000173_150 0.0922378678 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
3 Hb_006915_020 0.0965194711 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
4 Hb_027380_030 0.1112441492 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
5 Hb_016734_090 0.1144404342 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
6 Hb_000599_170 0.1165648543 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
7 Hb_002092_100 0.1200691887 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
8 Hb_000345_490 0.1203362644 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
9 Hb_000077_120 0.1249296921 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
10 Hb_001269_200 0.1249787853 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
11 Hb_002471_180 0.1252879671 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_048476_150 0.1258576583 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
13 Hb_000735_050 0.1281470445 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
14 Hb_000021_020 0.1288020167 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
15 Hb_002890_150 0.1295260628 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
16 Hb_000045_320 0.1295864979 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
17 Hb_011609_170 0.1301497887 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
18 Hb_001807_030 0.1304592782 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
19 Hb_000661_020 0.1314154812 - - BnaC08g27190D [Brassica napus]
20 Hb_003894_040 0.131994695 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000165_140 Hb_000165_140 Hb_000173_150 Hb_000173_150 Hb_000165_140--Hb_000173_150 Hb_006915_020 Hb_006915_020 Hb_000165_140--Hb_006915_020 Hb_027380_030 Hb_027380_030 Hb_000165_140--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_000165_140--Hb_016734_090 Hb_000599_170 Hb_000599_170 Hb_000165_140--Hb_000599_170 Hb_002092_100 Hb_002092_100 Hb_000165_140--Hb_002092_100 Hb_058551_010 Hb_058551_010 Hb_000173_150--Hb_058551_010 Hb_000230_430 Hb_000230_430 Hb_000173_150--Hb_000230_430 Hb_000069_590 Hb_000069_590 Hb_000173_150--Hb_000069_590 Hb_002739_130 Hb_002739_130 Hb_000173_150--Hb_002739_130 Hb_000735_050 Hb_000735_050 Hb_000173_150--Hb_000735_050 Hb_006915_020--Hb_027380_030 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_003894_040 Hb_003894_040 Hb_006915_020--Hb_003894_040 Hb_000453_140 Hb_000453_140 Hb_006915_020--Hb_000453_140 Hb_002805_060 Hb_002805_060 Hb_027380_030--Hb_002805_060 Hb_027380_030--Hb_000599_170 Hb_002896_060 Hb_002896_060 Hb_027380_030--Hb_002896_060 Hb_001051_090 Hb_001051_090 Hb_027380_030--Hb_001051_090 Hb_027380_030--Hb_000453_140 Hb_016734_090--Hb_002739_130 Hb_011918_050 Hb_011918_050 Hb_016734_090--Hb_011918_050 Hb_006452_160 Hb_006452_160 Hb_016734_090--Hb_006452_160 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_000563_330 Hb_000563_330 Hb_016734_090--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_016734_090--Hb_000661_020 Hb_000599_170--Hb_002805_060 Hb_000599_170--Hb_003894_040 Hb_000599_170--Hb_001051_090 Hb_000599_170--Hb_006915_020 Hb_000599_170--Hb_002092_100 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002092_100--Hb_002805_060 Hb_002092_100--Hb_027380_030 Hb_002092_100--Hb_016734_090 Hb_002681_170 Hb_002681_170 Hb_002092_100--Hb_002681_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.4485 72.6471 103.808 50.128 90.3621 75.1676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4437 6.11405 20.8646 21.8763 24.6906

CAGE analysis