Hb_000021_020

Information

Type -
Description -
Location Contig21: 38823-40239
Sequence    

Annotation

kegg
ID mdm:103431443
description zinc-metallopeptidase, peroxisomal-like
nr
ID XP_008367821.1
description PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
swissprot
ID -
description -
trembl
ID W9QXK9
description Zinc-metallopeptidase OS=Morus notabilis GN=L484_004756 PE=4 SV=1
Gene Ontology
ID GO:0004222
description zinc- peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21713: 38468-71013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000021_020 0.0 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
2 Hb_003529_130 0.0811769057 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
3 Hb_011609_170 0.0820228153 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
4 Hb_002307_350 0.0898810048 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
5 Hb_006915_020 0.0907716433 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
6 Hb_005408_020 0.0947762448 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008725_130 0.0998994735 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
8 Hb_001731_020 0.1008196829 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
9 Hb_000120_620 0.1010189755 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
10 Hb_001489_070 0.1061760946 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
11 Hb_003097_180 0.1079409418 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
12 Hb_011930_080 0.1109276615 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
13 Hb_002374_320 0.1111219776 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
14 Hb_001508_020 0.1113974556 - - myosin vIII, putative [Ricinus communis]
15 Hb_002888_070 0.1146558817 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
16 Hb_000261_290 0.1163753833 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
17 Hb_003894_040 0.1172162757 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_001900_120 0.1177877633 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
19 Hb_002066_080 0.1180951284 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
20 Hb_007456_010 0.1186969321 - - hypothetical protein L484_003540 [Morus notabilis]

Gene co-expression network

sample Hb_000021_020 Hb_000021_020 Hb_003529_130 Hb_003529_130 Hb_000021_020--Hb_003529_130 Hb_011609_170 Hb_011609_170 Hb_000021_020--Hb_011609_170 Hb_002307_350 Hb_002307_350 Hb_000021_020--Hb_002307_350 Hb_006915_020 Hb_006915_020 Hb_000021_020--Hb_006915_020 Hb_005408_020 Hb_005408_020 Hb_000021_020--Hb_005408_020 Hb_008725_130 Hb_008725_130 Hb_000021_020--Hb_008725_130 Hb_000120_620 Hb_000120_620 Hb_003529_130--Hb_000120_620 Hb_003029_130 Hb_003029_130 Hb_003529_130--Hb_003029_130 Hb_080147_040 Hb_080147_040 Hb_003529_130--Hb_080147_040 Hb_003529_130--Hb_011609_170 Hb_001508_020 Hb_001508_020 Hb_003529_130--Hb_001508_020 Hb_011609_170--Hb_008725_130 Hb_011609_170--Hb_005408_020 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_000868_060 Hb_000868_060 Hb_011609_170--Hb_000868_060 Hb_001050_010 Hb_001050_010 Hb_011609_170--Hb_001050_010 Hb_001163_120 Hb_001163_120 Hb_011609_170--Hb_001163_120 Hb_002307_350--Hb_005408_020 Hb_002249_120 Hb_002249_120 Hb_002307_350--Hb_002249_120 Hb_002307_350--Hb_008725_130 Hb_017895_020 Hb_017895_020 Hb_002307_350--Hb_017895_020 Hb_000914_080 Hb_000914_080 Hb_002307_350--Hb_000914_080 Hb_027380_030 Hb_027380_030 Hb_006915_020--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_006915_020--Hb_002092_100 Hb_000165_140 Hb_000165_140 Hb_006915_020--Hb_000165_140 Hb_003894_040 Hb_003894_040 Hb_006915_020--Hb_003894_040 Hb_000453_140 Hb_000453_140 Hb_006915_020--Hb_000453_140 Hb_005408_020--Hb_000914_080 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_008725_130--Hb_017895_020 Hb_000329_130 Hb_000329_130 Hb_008725_130--Hb_000329_130 Hb_002675_040 Hb_002675_040 Hb_008725_130--Hb_002675_040 Hb_001900_120 Hb_001900_120 Hb_008725_130--Hb_001900_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.044 105.002 131.203 79.9647 185.898 203.701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.5857 16.8201 47.3373 87.3383 37.3833

CAGE analysis