Hb_000069_590

Information

Type -
Description -
Location Contig69: 639409-644580
Sequence    

Annotation

kegg
ID tcc:TCM_005190
description Indole-3-acetic acid-amido synthetase GH3.5 isoform 2
nr
ID AFH35030.1
description auxin-responsive GH3 family protein [Hevea brasiliensis]
swissprot
ID Q6I581
description Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1
trembl
ID K7P6R8
description Auxin-responsive GH3 family protein OS=Hevea brasiliensis GN=GH3 PE=2 SV=1
Gene Ontology
ID GO:0019899
description probable indole-3-acetic acid-amido synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54267: 639384-644448 , PASA_asmbl_54268: 643094-643747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_590 0.0 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
2 Hb_000735_050 0.0542276374 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
3 Hb_000186_330 0.0758142414 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
4 Hb_000230_430 0.083079635 - - catalytic, putative [Ricinus communis]
5 Hb_003994_140 0.0843588808 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000718_070 0.0856316594 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000336_110 0.0933924664 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_001077_030 0.0952804608 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
9 Hb_003746_030 0.0963633905 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
10 Hb_000173_150 0.0981087453 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
11 Hb_002379_050 0.0982220281 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
12 Hb_001832_130 0.0996196075 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
13 Hb_058551_010 0.1010401709 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_031711_010 0.1028758816 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
15 Hb_001301_220 0.104044648 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
16 Hb_014361_150 0.1054842223 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
17 Hb_000625_120 0.1056673273 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
18 Hb_003096_060 0.1082723228 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
19 Hb_000264_070 0.1088902459 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
20 Hb_004631_190 0.1100791961 - - PREDICTED: protein SCAI homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000069_590 Hb_000069_590 Hb_000735_050 Hb_000735_050 Hb_000069_590--Hb_000735_050 Hb_000186_330 Hb_000186_330 Hb_000069_590--Hb_000186_330 Hb_000230_430 Hb_000230_430 Hb_000069_590--Hb_000230_430 Hb_003994_140 Hb_003994_140 Hb_000069_590--Hb_003994_140 Hb_000718_070 Hb_000718_070 Hb_000069_590--Hb_000718_070 Hb_000336_110 Hb_000336_110 Hb_000069_590--Hb_000336_110 Hb_000735_050--Hb_003994_140 Hb_000735_050--Hb_000718_070 Hb_000735_050--Hb_000186_330 Hb_000735_050--Hb_000336_110 Hb_001832_130 Hb_001832_130 Hb_000735_050--Hb_001832_130 Hb_003746_030 Hb_003746_030 Hb_000186_330--Hb_003746_030 Hb_002379_050 Hb_002379_050 Hb_000186_330--Hb_002379_050 Hb_014361_150 Hb_014361_150 Hb_000186_330--Hb_014361_150 Hb_000186_330--Hb_003994_140 Hb_001243_060 Hb_001243_060 Hb_000230_430--Hb_001243_060 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_009780_100 Hb_009780_100 Hb_000230_430--Hb_009780_100 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_003994_140--Hb_039605_010 Hb_000563_330 Hb_000563_330 Hb_003994_140--Hb_000563_330 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_002042_030 Hb_002042_030 Hb_003994_140--Hb_002042_030 Hb_001077_030 Hb_001077_030 Hb_000718_070--Hb_001077_030 Hb_002311_070 Hb_002311_070 Hb_000718_070--Hb_002311_070 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_000718_070--Hb_004631_190 Hb_003680_230 Hb_003680_230 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030 Hb_000264_080 Hb_000264_080 Hb_000336_110--Hb_000264_080 Hb_000363_280 Hb_000363_280 Hb_000336_110--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_000336_110--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_000336_110--Hb_009771_100 Hb_167381_020 Hb_167381_020 Hb_000336_110--Hb_167381_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.4229 117.253 115.039 79.4714 118.708 84.5933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.8339 33.5266 30.6903 36.9226 23.6915

CAGE analysis