Hb_003746_030

Information

Type -
Description -
Location Contig3746: 35365-43726
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04980g
description POPTRDRAFT_560508; hypothetical protein
nr
ID XP_012086153.1
description PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
swissprot
ID O65628
description Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabidopsis thaliana GN=CTU2 PE=2 SV=3
trembl
ID A0A067JQ14
description Cytoplasmic tRNA 2-thiolation protein 2 OS=Jatropha curcas GN=JCGZ_21084 PE=3 SV=1
Gene Ontology
ID GO:0005737
description cytoplasmic trna 2-thiolation protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38195: 34985-35284 , PASA_asmbl_38196: 35658-43529 , PASA_asmbl_38197: 35541-35803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003746_030 0.0 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
2 Hb_000186_330 0.0681415201 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
3 Hb_001804_110 0.0724984388 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
4 Hb_007163_060 0.0734659969 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
5 Hb_000959_230 0.085164481 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
6 Hb_010998_040 0.0894774652 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
7 Hb_004223_110 0.0947909744 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
8 Hb_000069_590 0.0963633905 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
9 Hb_009449_060 0.099022532 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
10 Hb_000608_350 0.1006575218 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
11 Hb_000718_070 0.1008615132 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000635_040 0.1029981964 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
13 Hb_008921_010 0.1034228242 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
14 Hb_000735_050 0.1039192018 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
15 Hb_162060_010 0.1045062802 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002054_050 0.1061905008 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
17 Hb_003994_140 0.1066412271 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005322_050 0.108478596 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
19 Hb_003096_060 0.1089667355 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
20 Hb_005306_160 0.1090069906 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003746_030 Hb_003746_030 Hb_000186_330 Hb_000186_330 Hb_003746_030--Hb_000186_330 Hb_001804_110 Hb_001804_110 Hb_003746_030--Hb_001804_110 Hb_007163_060 Hb_007163_060 Hb_003746_030--Hb_007163_060 Hb_000959_230 Hb_000959_230 Hb_003746_030--Hb_000959_230 Hb_010998_040 Hb_010998_040 Hb_003746_030--Hb_010998_040 Hb_004223_110 Hb_004223_110 Hb_003746_030--Hb_004223_110 Hb_000069_590 Hb_000069_590 Hb_000186_330--Hb_000069_590 Hb_000735_050 Hb_000735_050 Hb_000186_330--Hb_000735_050 Hb_002379_050 Hb_002379_050 Hb_000186_330--Hb_002379_050 Hb_014361_150 Hb_014361_150 Hb_000186_330--Hb_014361_150 Hb_003994_140 Hb_003994_140 Hb_000186_330--Hb_003994_140 Hb_001804_110--Hb_000959_230 Hb_001804_110--Hb_010998_040 Hb_002054_050 Hb_002054_050 Hb_001804_110--Hb_002054_050 Hb_006688_050 Hb_006688_050 Hb_001804_110--Hb_006688_050 Hb_001140_030 Hb_001140_030 Hb_001804_110--Hb_001140_030 Hb_005322_050 Hb_005322_050 Hb_007163_060--Hb_005322_050 Hb_172257_010 Hb_172257_010 Hb_007163_060--Hb_172257_010 Hb_007163_060--Hb_004223_110 Hb_000300_550 Hb_000300_550 Hb_007163_060--Hb_000300_550 Hb_009449_060 Hb_009449_060 Hb_007163_060--Hb_009449_060 Hb_000959_230--Hb_002054_050 Hb_000959_230--Hb_010998_040 Hb_043792_010 Hb_043792_010 Hb_000959_230--Hb_043792_010 Hb_008921_010 Hb_008921_010 Hb_000959_230--Hb_008921_010 Hb_007007_040 Hb_007007_040 Hb_000959_230--Hb_007007_040 Hb_010998_040--Hb_001140_030 Hb_010362_030 Hb_010362_030 Hb_010998_040--Hb_010362_030 Hb_000139_190 Hb_000139_190 Hb_010998_040--Hb_000139_190 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_000608_350 Hb_000608_350 Hb_004223_110--Hb_000608_350 Hb_004223_110--Hb_008921_010 Hb_004223_110--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_004223_110--Hb_000589_190 Hb_004223_110--Hb_005322_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.4109 9.42262 13.4832 10.3258 9.84523 6.29684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.57869 4.79704 4.21406 3.59831 2.80796

CAGE analysis