Hb_001804_110

Information

Type -
Description -
Location Contig1804: 207410-217895
Sequence    

Annotation

kegg
ID tcc:TCM_021849
description Prenylated RAB acceptor 1.A1
nr
ID KDO36511.1
description hypothetical protein CISIN_1g031200mg [Citrus sinensis]
swissprot
ID Q9LZM7
description PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1
trembl
ID A0A067DCZ5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031200mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description pra1 family protein a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17463: 213374-213685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001804_110 0.0 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
2 Hb_000959_230 0.0256174757 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
3 Hb_010998_040 0.0605768739 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
4 Hb_003746_030 0.0724984388 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
5 Hb_002054_050 0.0729383361 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
6 Hb_006688_050 0.0769557871 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
7 Hb_001140_030 0.0778357104 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
8 Hb_000879_180 0.0792988598 - - XPA-binding protein, putative [Ricinus communis]
9 Hb_000130_420 0.0793753539 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
10 Hb_008921_010 0.0810169132 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
11 Hb_043792_010 0.0812317311 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
12 Hb_007007_040 0.0820927686 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
13 Hb_002042_030 0.082265134 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
14 Hb_000751_030 0.0838005289 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
15 Hb_000718_070 0.084252376 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000358_230 0.0842997555 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
17 Hb_010407_050 0.0848116838 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
18 Hb_002909_040 0.0871463944 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
19 Hb_000567_190 0.0871951287 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
20 Hb_001077_030 0.0873616597 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001804_110 Hb_001804_110 Hb_000959_230 Hb_000959_230 Hb_001804_110--Hb_000959_230 Hb_010998_040 Hb_010998_040 Hb_001804_110--Hb_010998_040 Hb_003746_030 Hb_003746_030 Hb_001804_110--Hb_003746_030 Hb_002054_050 Hb_002054_050 Hb_001804_110--Hb_002054_050 Hb_006688_050 Hb_006688_050 Hb_001804_110--Hb_006688_050 Hb_001140_030 Hb_001140_030 Hb_001804_110--Hb_001140_030 Hb_000959_230--Hb_002054_050 Hb_000959_230--Hb_010998_040 Hb_043792_010 Hb_043792_010 Hb_000959_230--Hb_043792_010 Hb_008921_010 Hb_008921_010 Hb_000959_230--Hb_008921_010 Hb_007007_040 Hb_007007_040 Hb_000959_230--Hb_007007_040 Hb_010998_040--Hb_001140_030 Hb_010362_030 Hb_010362_030 Hb_010998_040--Hb_010362_030 Hb_000139_190 Hb_000139_190 Hb_010998_040--Hb_000139_190 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_000186_330 Hb_000186_330 Hb_003746_030--Hb_000186_330 Hb_007163_060 Hb_007163_060 Hb_003746_030--Hb_007163_060 Hb_003746_030--Hb_000959_230 Hb_003746_030--Hb_010998_040 Hb_004223_110 Hb_004223_110 Hb_003746_030--Hb_004223_110 Hb_002054_050--Hb_008921_010 Hb_000317_510 Hb_000317_510 Hb_002054_050--Hb_000317_510 Hb_005463_130 Hb_005463_130 Hb_002054_050--Hb_005463_130 Hb_001005_030 Hb_001005_030 Hb_002054_050--Hb_001005_030 Hb_001501_080 Hb_001501_080 Hb_002054_050--Hb_001501_080 Hb_010407_050 Hb_010407_050 Hb_006688_050--Hb_010407_050 Hb_001488_200 Hb_001488_200 Hb_006688_050--Hb_001488_200 Hb_004994_010 Hb_004994_010 Hb_006688_050--Hb_004994_010 Hb_005965_030 Hb_005965_030 Hb_006688_050--Hb_005965_030 Hb_000928_220 Hb_000928_220 Hb_006688_050--Hb_000928_220 Hb_002078_110 Hb_002078_110 Hb_006688_050--Hb_002078_110 Hb_001952_120 Hb_001952_120 Hb_001140_030--Hb_001952_120 Hb_032264_060 Hb_032264_060 Hb_001140_030--Hb_032264_060 Hb_004631_190 Hb_004631_190 Hb_001140_030--Hb_004631_190 Hb_001140_030--Hb_005965_030 Hb_001405_190 Hb_001405_190 Hb_001140_030--Hb_001405_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.8119 39.147 57.3146 40.6114 50.5469 30.2496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7724 28.7149 24.4653 22.6065 20.616

CAGE analysis