Hb_000130_420

Information

Type -
Description -
Location Contig130: 373657-378884
Sequence    

Annotation

kegg
ID rcu:RCOM_1743330
description ring finger protein, putative
nr
ID XP_012074205.1
description PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
swissprot
ID Q9ZQF9
description E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana GN=MBR1 PE=1 SV=1
trembl
ID A0A067KJ79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09826 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase mbr1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08941: 373652-378816
cDNA
(Sanger)
(ID:Location)		 047_B21.ab1: 375737-378816

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_420 0.0 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
2 Hb_004912_030 0.055935863 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
3 Hb_000362_170 0.066811016 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
4 Hb_000635_040 0.0694251774 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
5 Hb_011972_020 0.0696312629 - - protein binding protein, putative [Ricinus communis]
6 Hb_002014_040 0.0717568862 - - site-1 protease, putative [Ricinus communis]
7 Hb_000238_040 0.0742023325 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
8 Hb_000317_510 0.0750022483 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
9 Hb_002326_040 0.0759277022 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
10 Hb_002413_010 0.076498495 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_000959_230 0.0767499671 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
12 Hb_000567_190 0.0780214082 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
13 Hb_001579_330 0.0782233913 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
14 Hb_000847_080 0.0784227858 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
15 Hb_000214_050 0.0785402861 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
16 Hb_010998_040 0.0786981829 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
17 Hb_103747_020 0.0792476142 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
18 Hb_001804_110 0.0793753539 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
19 Hb_002814_110 0.079876611 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
20 Hb_008226_090 0.0808147927 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_420 Hb_000130_420 Hb_004912_030 Hb_004912_030 Hb_000130_420--Hb_004912_030 Hb_000362_170 Hb_000362_170 Hb_000130_420--Hb_000362_170 Hb_000635_040 Hb_000635_040 Hb_000130_420--Hb_000635_040 Hb_011972_020 Hb_011972_020 Hb_000130_420--Hb_011972_020 Hb_002014_040 Hb_002014_040 Hb_000130_420--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_000130_420--Hb_000238_040 Hb_001005_030 Hb_001005_030 Hb_004912_030--Hb_001005_030 Hb_002092_080 Hb_002092_080 Hb_004912_030--Hb_002092_080 Hb_000243_210 Hb_000243_210 Hb_004912_030--Hb_000243_210 Hb_004912_030--Hb_000362_170 Hb_053079_020 Hb_053079_020 Hb_004912_030--Hb_053079_020 Hb_005895_010 Hb_005895_010 Hb_000362_170--Hb_005895_010 Hb_000362_170--Hb_002014_040 Hb_000362_170--Hb_001005_030 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_007800_020 Hb_007800_020 Hb_000635_040--Hb_007800_020 Hb_000046_570 Hb_000046_570 Hb_000635_040--Hb_000046_570 Hb_000635_040--Hb_000362_170 Hb_000567_190 Hb_000567_190 Hb_000635_040--Hb_000567_190 Hb_008226_090 Hb_008226_090 Hb_000635_040--Hb_008226_090 Hb_055235_020 Hb_055235_020 Hb_011972_020--Hb_055235_020 Hb_000457_230 Hb_000457_230 Hb_011972_020--Hb_000457_230 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_011972_020--Hb_002014_040 Hb_011972_020--Hb_000238_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_002014_040--Hb_008226_090 Hb_002014_040--Hb_005895_010 Hb_001579_330 Hb_001579_330 Hb_000238_040--Hb_001579_330 Hb_000116_030 Hb_000116_030 Hb_000238_040--Hb_000116_030 Hb_002811_270 Hb_002811_270 Hb_000238_040--Hb_002811_270 Hb_000238_040--Hb_000457_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2289 27.3895 34.1855 25.1507 26.5106 18.1614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0599 13.0707 14.4441 13.7707 21.0305

CAGE analysis