Hb_007800_020

Information

Type -
Description -
Location Contig7800: 42813-49209
Sequence    

Annotation

kegg
ID rcu:RCOM_0891750
description catalytic, putative
nr
ID XP_012065950.1
description PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID A0A067LG75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00087 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57934: 42805-49256
cDNA
(Sanger)
(ID:Location)		 012_G14.ab1: 48497-49256

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007800_020 0.0 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
2 Hb_000635_040 0.0535782426 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
3 Hb_000640_070 0.0629699582 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
4 Hb_005895_010 0.065820021 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
5 Hb_000362_170 0.0685829388 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
6 Hb_000608_350 0.0687401598 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
7 Hb_001002_060 0.0719601482 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
8 Hb_010272_010 0.0756718656 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
9 Hb_000580_030 0.0763662305 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
10 Hb_005723_020 0.0769844128 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000300_550 0.077293267 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
12 Hb_027654_020 0.0773290215 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
13 Hb_012215_010 0.0775229598 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
14 Hb_005322_050 0.0785664366 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
15 Hb_000664_110 0.079403565 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
16 Hb_006022_010 0.0794095129 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
17 Hb_001623_110 0.0799784402 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
18 Hb_005946_210 0.0800986808 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
19 Hb_000737_030 0.0803258505 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
20 Hb_008226_090 0.0805671085 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007800_020 Hb_007800_020 Hb_000635_040 Hb_000635_040 Hb_007800_020--Hb_000635_040 Hb_000640_070 Hb_000640_070 Hb_007800_020--Hb_000640_070 Hb_005895_010 Hb_005895_010 Hb_007800_020--Hb_005895_010 Hb_000362_170 Hb_000362_170 Hb_007800_020--Hb_000362_170 Hb_000608_350 Hb_000608_350 Hb_007800_020--Hb_000608_350 Hb_001002_060 Hb_001002_060 Hb_007800_020--Hb_001002_060 Hb_000130_420 Hb_000130_420 Hb_000635_040--Hb_000130_420 Hb_000046_570 Hb_000046_570 Hb_000635_040--Hb_000046_570 Hb_000635_040--Hb_000362_170 Hb_000567_190 Hb_000567_190 Hb_000635_040--Hb_000567_190 Hb_008226_090 Hb_008226_090 Hb_000635_040--Hb_008226_090 Hb_012215_010 Hb_012215_010 Hb_000640_070--Hb_012215_010 Hb_073973_150 Hb_073973_150 Hb_000640_070--Hb_073973_150 Hb_008397_010 Hb_008397_010 Hb_000640_070--Hb_008397_010 Hb_002784_030 Hb_002784_030 Hb_000640_070--Hb_002784_030 Hb_010272_010 Hb_010272_010 Hb_000640_070--Hb_010272_010 Hb_001194_020 Hb_001194_020 Hb_000640_070--Hb_001194_020 Hb_005895_010--Hb_000362_170 Hb_002539_110 Hb_002539_110 Hb_005895_010--Hb_002539_110 Hb_002014_040 Hb_002014_040 Hb_005895_010--Hb_002014_040 Hb_005895_010--Hb_001002_060 Hb_005895_010--Hb_000640_070 Hb_000362_170--Hb_002014_040 Hb_001005_030 Hb_001005_030 Hb_000362_170--Hb_001005_030 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_000637_140 Hb_000637_140 Hb_000608_350--Hb_000637_140 Hb_007163_060 Hb_007163_060 Hb_000608_350--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_000608_350--Hb_005322_050 Hb_004223_110 Hb_004223_110 Hb_000608_350--Hb_004223_110 Hb_005723_020 Hb_005723_020 Hb_000608_350--Hb_005723_020 Hb_023313_040 Hb_023313_040 Hb_001002_060--Hb_023313_040 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_025668_010 Hb_025668_010 Hb_001002_060--Hb_025668_010 Hb_000261_210 Hb_000261_210 Hb_001002_060--Hb_000261_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6652 22.6497 28.5933 33.0273 22.846 20.0197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.98634 8.77845 9.65141 14.8541 17.6571

CAGE analysis