Hb_000116_030

Information

Type -
Description -
Location Contig116: 20248-34516
Sequence    

Annotation

kegg
ID rcu:RCOM_0873670
description GTP binding protein, putative
nr
ID XP_012065370.1
description PREDICTED: protein GRIP [Jatropha curcas]
swissprot
ID Q8S2T0
description Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2
trembl
ID A0A067LHT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22376 PE=4 SV=1
Gene Ontology
ID GO:0044699
description protein grip

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04806: 33479-34493 , PASA_asmbl_04807: 34033-34396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_030 0.0 - - PREDICTED: protein GRIP [Jatropha curcas]
2 Hb_000238_040 0.0642927966 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
3 Hb_001241_010 0.0761829872 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_001584_350 0.0765839724 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
5 Hb_000330_060 0.0799514051 - - PREDICTED: adenosine kinase [Jatropha curcas]
6 Hb_001579_330 0.0803167484 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
7 Hb_002889_010 0.0822002842 - - ubx domain-containing, putative [Ricinus communis]
8 Hb_000189_600 0.0827006401 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
9 Hb_128548_010 0.0905421094 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000787_150 0.0908038818 - - PREDICTED: protein NDR1-like [Jatropha curcas]
11 Hb_000086_500 0.0909562124 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_016777_040 0.0933448288 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
13 Hb_004586_060 0.094480379 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
14 Hb_000134_270 0.094851186 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
15 Hb_007062_040 0.0957297444 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
16 Hb_001430_080 0.0959240307 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
17 Hb_000174_150 0.0975768649 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
18 Hb_005779_010 0.0979652135 - - catalytic, putative [Ricinus communis]
19 Hb_000416_110 0.0989912623 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
20 Hb_032990_010 0.0993391041 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000116_030 Hb_000116_030 Hb_000238_040 Hb_000238_040 Hb_000116_030--Hb_000238_040 Hb_001241_010 Hb_001241_010 Hb_000116_030--Hb_001241_010 Hb_001584_350 Hb_001584_350 Hb_000116_030--Hb_001584_350 Hb_000330_060 Hb_000330_060 Hb_000116_030--Hb_000330_060 Hb_001579_330 Hb_001579_330 Hb_000116_030--Hb_001579_330 Hb_002889_010 Hb_002889_010 Hb_000116_030--Hb_002889_010 Hb_000238_040--Hb_001579_330 Hb_011972_020 Hb_011972_020 Hb_000238_040--Hb_011972_020 Hb_002811_270 Hb_002811_270 Hb_000238_040--Hb_002811_270 Hb_000130_420 Hb_000130_420 Hb_000238_040--Hb_000130_420 Hb_000457_230 Hb_000457_230 Hb_000238_040--Hb_000457_230 Hb_004333_040 Hb_004333_040 Hb_001241_010--Hb_004333_040 Hb_000189_600 Hb_000189_600 Hb_001241_010--Hb_000189_600 Hb_001408_110 Hb_001408_110 Hb_001241_010--Hb_001408_110 Hb_000215_300 Hb_000215_300 Hb_001241_010--Hb_000215_300 Hb_183433_010 Hb_183433_010 Hb_001241_010--Hb_183433_010 Hb_001723_140 Hb_001723_140 Hb_001584_350--Hb_001723_140 Hb_000529_060 Hb_000529_060 Hb_001584_350--Hb_000529_060 Hb_001171_030 Hb_001171_030 Hb_001584_350--Hb_001171_030 Hb_000174_150 Hb_000174_150 Hb_001584_350--Hb_000174_150 Hb_128548_010 Hb_128548_010 Hb_001584_350--Hb_128548_010 Hb_000977_300 Hb_000977_300 Hb_001584_350--Hb_000977_300 Hb_016347_020 Hb_016347_020 Hb_000330_060--Hb_016347_020 Hb_000330_060--Hb_000215_300 Hb_000330_060--Hb_001579_330 Hb_002686_080 Hb_002686_080 Hb_000330_060--Hb_002686_080 Hb_000330_060--Hb_000238_040 Hb_001579_330--Hb_002811_270 Hb_001579_330--Hb_011972_020 Hb_001579_330--Hb_000130_420 Hb_001257_030 Hb_001257_030 Hb_001579_330--Hb_001257_030 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_002889_010--Hb_001377_310 Hb_000816_250 Hb_000816_250 Hb_002889_010--Hb_000816_250 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.697451 0.641629 0.824187 0.584287 0.406896 0.36782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.464573 0.365513 0.202822 0.599864 0.497046

CAGE analysis