Hb_002686_080

Information

Type transcription factor
Description TF Family: PHD
Location Contig2686: 45499-49226
Sequence    

Annotation

kegg
ID rcu:RCOM_1121770
description Inhibitor of growth protein, putative
nr
ID XP_012070470.1
description PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
swissprot
ID B3H615
description PHD finger protein ING2 OS=Arabidopsis thaliana GN=ING2 PE=1 SV=1
trembl
ID A0A067KXQ2
description PHD finger protein ING OS=Jatropha curcas GN=JCGZ_02733 PE=3 SV=1
Gene Ontology
ID GO:0005634
description phd finger protein ing2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27994: 45522-49106 , PASA_asmbl_27995: 46947-47058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_080 0.0 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
2 Hb_001053_190 0.0651232801 - - ADP,ATP carrier protein, putative [Ricinus communis]
3 Hb_003540_050 0.0766249703 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
4 Hb_000163_260 0.0801118512 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
5 Hb_000890_130 0.0802905415 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
6 Hb_016448_010 0.081136307 - - Protein MYG1, putative [Ricinus communis]
7 Hb_003506_030 0.0817896337 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_000072_300 0.0853430257 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
9 Hb_004712_190 0.0857887243 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
10 Hb_001227_120 0.0858281964 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
11 Hb_003119_090 0.0905212902 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
12 Hb_001723_150 0.0906128988 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
13 Hb_000330_060 0.0907100205 - - PREDICTED: adenosine kinase [Jatropha curcas]
14 Hb_002326_110 0.0912830908 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
15 Hb_000089_210 0.0913732126 - - unknown [Medicago truncatula]
16 Hb_005649_100 0.0927007946 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
17 Hb_001504_010 0.093433835 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
18 Hb_000028_520 0.094077679 - - hypothetical protein L484_025125 [Morus notabilis]
19 Hb_005977_030 0.0943677552 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
20 Hb_005064_010 0.0952223745 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]

Gene co-expression network

sample Hb_002686_080 Hb_002686_080 Hb_001053_190 Hb_001053_190 Hb_002686_080--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_002686_080--Hb_003540_050 Hb_000163_260 Hb_000163_260 Hb_002686_080--Hb_000163_260 Hb_000890_130 Hb_000890_130 Hb_002686_080--Hb_000890_130 Hb_016448_010 Hb_016448_010 Hb_002686_080--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_002686_080--Hb_003506_030 Hb_001053_190--Hb_003540_050 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_000318_220 Hb_000318_220 Hb_001053_190--Hb_000318_220 Hb_001053_190--Hb_016448_010 Hb_000072_300 Hb_000072_300 Hb_003540_050--Hb_000072_300 Hb_005064_010 Hb_005064_010 Hb_003540_050--Hb_005064_010 Hb_001279_190 Hb_001279_190 Hb_003540_050--Hb_001279_190 Hb_002740_080 Hb_002740_080 Hb_003540_050--Hb_002740_080 Hb_001504_010 Hb_001504_010 Hb_000163_260--Hb_001504_010 Hb_001882_010 Hb_001882_010 Hb_000163_260--Hb_001882_010 Hb_012438_030 Hb_012438_030 Hb_000163_260--Hb_012438_030 Hb_009476_130 Hb_009476_130 Hb_000163_260--Hb_009476_130 Hb_001703_040 Hb_001703_040 Hb_000163_260--Hb_001703_040 Hb_000120_890 Hb_000120_890 Hb_000163_260--Hb_000120_890 Hb_002687_120 Hb_002687_120 Hb_000890_130--Hb_002687_120 Hb_003119_060 Hb_003119_060 Hb_000890_130--Hb_003119_060 Hb_000028_520 Hb_000028_520 Hb_000890_130--Hb_000028_520 Hb_000270_680 Hb_000270_680 Hb_000890_130--Hb_000270_680 Hb_002304_150 Hb_002304_150 Hb_000890_130--Hb_002304_150 Hb_016448_010--Hb_003506_030 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_016448_010--Hb_012438_030 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010 Hb_000089_210 Hb_000089_210 Hb_003506_030--Hb_000089_210 Hb_029695_080 Hb_029695_080 Hb_003506_030--Hb_029695_080 Hb_087313_010 Hb_087313_010 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.53625 6.13539 18.9003 12.9886 5.35189 5.41845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.26322 6.18107 4.90175 7.80318 7.87193

CAGE analysis