Hb_009476_130

Information

Type -
Description -
Location Contig9476: 140736-148210
Sequence    

Annotation

kegg
ID rcu:RCOM_0838590
description glycosyl transferase, putative
nr
ID CAN79918.1
description hypothetical protein VITISV_005430 [Vitis vinifera]
swissprot
ID Q9XEE9
description GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG11 PE=1 SV=2
trembl
ID A5ACP1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005430 PE=4 SV=1
Gene Ontology
ID GO:0005576
description gdp-man:man c -pp-dol alpha- -mannosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63303: 140958-141057 , PASA_asmbl_63304: 141110-144486 , PASA_asmbl_63307: 144815-148166
cDNA
(Sanger)
(ID:Location)		 014_C13.ab1: 144815-147451

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_130 0.0 - - hypothetical protein VITISV_005430 [Vitis vinifera]
2 Hb_000163_260 0.0744143619 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
3 Hb_113853_010 0.0790475403 - - 50S ribosomal protein L2, putative [Ricinus communis]
4 Hb_012438_030 0.0805203328 - - PREDICTED: protein sym-1 [Jatropha curcas]
5 Hb_000186_300 0.0845000415 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
6 Hb_001504_010 0.0851064137 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
7 Hb_000155_170 0.0860737012 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]
8 Hb_087313_010 0.0907192514 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000291_180 0.0916256171 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
10 Hb_002218_020 0.0922101435 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
11 Hb_000029_400 0.0922636966 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
12 Hb_000826_030 0.0941254839 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
13 Hb_001882_010 0.0944265122 - - -
14 Hb_002876_300 0.0945142519 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
15 Hb_016448_010 0.0969115421 - - Protein MYG1, putative [Ricinus communis]
16 Hb_168893_030 0.0974092514 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
17 Hb_027905_020 0.0975400909 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
18 Hb_001053_190 0.0977434755 - - ADP,ATP carrier protein, putative [Ricinus communis]
19 Hb_007483_070 0.098514185 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
20 Hb_005977_030 0.0994463405 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]

Gene co-expression network

sample Hb_009476_130 Hb_009476_130 Hb_000163_260 Hb_000163_260 Hb_009476_130--Hb_000163_260 Hb_113853_010 Hb_113853_010 Hb_009476_130--Hb_113853_010 Hb_012438_030 Hb_012438_030 Hb_009476_130--Hb_012438_030 Hb_000186_300 Hb_000186_300 Hb_009476_130--Hb_000186_300 Hb_001504_010 Hb_001504_010 Hb_009476_130--Hb_001504_010 Hb_000155_170 Hb_000155_170 Hb_009476_130--Hb_000155_170 Hb_000163_260--Hb_001504_010 Hb_001882_010 Hb_001882_010 Hb_000163_260--Hb_001882_010 Hb_000163_260--Hb_012438_030 Hb_001703_040 Hb_001703_040 Hb_000163_260--Hb_001703_040 Hb_000120_890 Hb_000120_890 Hb_000163_260--Hb_000120_890 Hb_065525_080 Hb_065525_080 Hb_113853_010--Hb_065525_080 Hb_002876_300 Hb_002876_300 Hb_113853_010--Hb_002876_300 Hb_005494_010 Hb_005494_010 Hb_113853_010--Hb_005494_010 Hb_093666_010 Hb_093666_010 Hb_113853_010--Hb_093666_010 Hb_021374_030 Hb_021374_030 Hb_113853_010--Hb_021374_030 Hb_087313_010 Hb_087313_010 Hb_012438_030--Hb_087313_010 Hb_012438_030--Hb_001703_040 Hb_002218_020 Hb_002218_020 Hb_012438_030--Hb_002218_020 Hb_012438_030--Hb_002876_300 Hb_102948_010 Hb_102948_010 Hb_012438_030--Hb_102948_010 Hb_000003_680 Hb_000003_680 Hb_000186_300--Hb_000003_680 Hb_003506_030 Hb_003506_030 Hb_000186_300--Hb_003506_030 Hb_001623_490 Hb_001623_490 Hb_000186_300--Hb_001623_490 Hb_000291_180 Hb_000291_180 Hb_000186_300--Hb_000291_180 Hb_004531_150 Hb_004531_150 Hb_000186_300--Hb_004531_150 Hb_007483_070 Hb_007483_070 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_008304_020 Hb_008304_020 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_003913_020 Hb_003913_020 Hb_000155_170--Hb_003913_020 Hb_001277_340 Hb_001277_340 Hb_000155_170--Hb_001277_340 Hb_000155_170--Hb_087313_010 Hb_017214_040 Hb_017214_040 Hb_000155_170--Hb_017214_040 Hb_000155_170--Hb_102948_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9714 17.0358 37.0408 22.38 10.3289 11.8018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3358 10.407 6.67803 13.8987 23.2768

CAGE analysis