Hb_000003_680

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig3: 525728-529639
Sequence    

Annotation

kegg
ID rcu:RCOM_1489460
description DNA binding protein, putative
nr
ID XP_012069084.1
description PREDICTED: myb-like protein H [Jatropha curcas]
swissprot
ID Q2V9B0
description Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KXJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24861 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31447: 525798-529472 , PASA_asmbl_31448: 525798-528686 , PASA_asmbl_31449: 527820-528069 , PASA_asmbl_31451: 527053-527269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_680 0.0 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
2 Hb_012286_020 0.0747093022 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
3 Hb_000787_080 0.0796383591 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
4 Hb_087313_010 0.0806138958 - - conserved hypothetical protein [Ricinus communis]
5 Hb_021576_150 0.0812807178 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
6 Hb_002218_020 0.0820342371 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
7 Hb_102948_010 0.0827784186 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
8 Hb_001776_210 0.0837748118 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_000318_220 0.0842120878 - - conserved hypothetical protein [Ricinus communis]
10 Hb_171554_010 0.089368563 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
11 Hb_009847_030 0.0903747066 - - zinc finger family protein [Populus trichocarpa]
12 Hb_000137_010 0.0910866942 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
13 Hb_000788_030 0.0933704499 - - PREDICTED: dynamin-2A [Jatropha curcas]
14 Hb_004531_150 0.0956065094 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
15 Hb_004003_030 0.0961295819 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003883_010 0.0965084659 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
17 Hb_000680_120 0.097074459 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
18 Hb_003506_030 0.0985560462 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_000186_300 0.0987337726 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
20 Hb_001766_070 0.0995963713 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000003_680 Hb_000003_680 Hb_012286_020 Hb_012286_020 Hb_000003_680--Hb_012286_020 Hb_000787_080 Hb_000787_080 Hb_000003_680--Hb_000787_080 Hb_087313_010 Hb_087313_010 Hb_000003_680--Hb_087313_010 Hb_021576_150 Hb_021576_150 Hb_000003_680--Hb_021576_150 Hb_002218_020 Hb_002218_020 Hb_000003_680--Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_000003_680--Hb_102948_010 Hb_000566_050 Hb_000566_050 Hb_012286_020--Hb_000566_050 Hb_012286_020--Hb_002218_020 Hb_012286_020--Hb_021576_150 Hb_012286_020--Hb_102948_010 Hb_000086_270 Hb_000086_270 Hb_012286_020--Hb_000086_270 Hb_001766_070 Hb_001766_070 Hb_000787_080--Hb_001766_070 Hb_000258_420 Hb_000258_420 Hb_000787_080--Hb_000258_420 Hb_000815_310 Hb_000815_310 Hb_000787_080--Hb_000815_310 Hb_033152_090 Hb_033152_090 Hb_000787_080--Hb_033152_090 Hb_000137_010 Hb_000137_010 Hb_000787_080--Hb_000137_010 Hb_012438_030 Hb_012438_030 Hb_087313_010--Hb_012438_030 Hb_087313_010--Hb_002218_020 Hb_001703_040 Hb_001703_040 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_087313_010--Hb_102948_010 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_001799_160 Hb_001799_160 Hb_021576_150--Hb_001799_160 Hb_001191_080 Hb_001191_080 Hb_021576_150--Hb_001191_080 Hb_021576_150--Hb_000566_050 Hb_021576_150--Hb_000787_080 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_002218_020--Hb_012438_030 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_102948_010--Hb_001430_020 Hb_005235_070 Hb_005235_070 Hb_102948_010--Hb_005235_070 Hb_102948_010--Hb_012438_030 Hb_000555_020 Hb_000555_020 Hb_102948_010--Hb_000555_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6164 20.5964 36.6852 25.0235 7.79136 9.44819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4031 12.7468 10.1931 7.45782 22.4681

CAGE analysis