Hb_012286_020

Information

Type -
Description -
Location Contig12286: 13242-15890
Sequence    

Annotation

kegg
ID rcu:RCOM_0763260
description hypothetical protein
nr
ID XP_012090860.1
description PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
swissprot
ID Q557K0
description TNF receptor-associated factor family protein DDB_G0273433/DDB_G0273509 OS=Dictyostelium discoideum GN=DDB_G0273433 PE=3 SV=1
trembl
ID A0A067JDH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03049 PE=4 SV=1
Gene Ontology
ID GO:0009941
description tnf receptor-associated factor family protein ddb_g0290965 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012286_020 0.0 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
2 Hb_000566_050 0.0569145861 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
3 Hb_000003_680 0.0747093022 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
4 Hb_002218_020 0.0919612169 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
5 Hb_021576_150 0.0920809082 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
6 Hb_102948_010 0.0945947952 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
7 Hb_000086_270 0.0955335518 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
8 Hb_000012_270 0.0961628579 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
9 Hb_000787_080 0.0968758909 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
10 Hb_087313_010 0.0973376391 - - conserved hypothetical protein [Ricinus communis]
11 Hb_171554_010 0.09829017 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
12 Hb_004003_030 0.1004811756 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012438_030 0.1006954751 - - PREDICTED: protein sym-1 [Jatropha curcas]
14 Hb_000663_080 0.1040383286 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
15 Hb_001430_020 0.1046036999 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
16 Hb_001409_060 0.1058091038 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
17 Hb_000318_220 0.105999139 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002249_020 0.1061642792 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
19 Hb_000788_030 0.1064023526 - - PREDICTED: dynamin-2A [Jatropha curcas]
20 Hb_001703_040 0.1074391846 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012286_020 Hb_012286_020 Hb_000566_050 Hb_000566_050 Hb_012286_020--Hb_000566_050 Hb_000003_680 Hb_000003_680 Hb_012286_020--Hb_000003_680 Hb_002218_020 Hb_002218_020 Hb_012286_020--Hb_002218_020 Hb_021576_150 Hb_021576_150 Hb_012286_020--Hb_021576_150 Hb_102948_010 Hb_102948_010 Hb_012286_020--Hb_102948_010 Hb_000086_270 Hb_000086_270 Hb_012286_020--Hb_000086_270 Hb_004003_030 Hb_004003_030 Hb_000566_050--Hb_004003_030 Hb_000566_050--Hb_021576_150 Hb_001799_160 Hb_001799_160 Hb_000566_050--Hb_001799_160 Hb_171554_010 Hb_171554_010 Hb_000566_050--Hb_171554_010 Hb_004032_320 Hb_004032_320 Hb_000566_050--Hb_004032_320 Hb_000787_080 Hb_000787_080 Hb_000003_680--Hb_000787_080 Hb_087313_010 Hb_087313_010 Hb_000003_680--Hb_087313_010 Hb_000003_680--Hb_021576_150 Hb_000003_680--Hb_002218_020 Hb_000003_680--Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_021576_150--Hb_001799_160 Hb_001191_080 Hb_001191_080 Hb_021576_150--Hb_001191_080 Hb_021576_150--Hb_000787_080 Hb_102948_010--Hb_001430_020 Hb_102948_010--Hb_087313_010 Hb_005235_070 Hb_005235_070 Hb_102948_010--Hb_005235_070 Hb_102948_010--Hb_012438_030 Hb_000555_020 Hb_000555_020 Hb_102948_010--Hb_000555_020 Hb_006120_040 Hb_006120_040 Hb_000086_270--Hb_006120_040 Hb_000327_330 Hb_000327_330 Hb_000086_270--Hb_000327_330 Hb_002249_020 Hb_002249_020 Hb_000086_270--Hb_002249_020 Hb_000663_080 Hb_000663_080 Hb_000086_270--Hb_000663_080 Hb_006438_020 Hb_006438_020 Hb_000086_270--Hb_006438_020 Hb_016448_010 Hb_016448_010 Hb_000086_270--Hb_016448_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49293 2.22336 5.00229 2.44215 0.926836 1.22021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02163 1.21554 1.70588 0.788496 2.39651

CAGE analysis