Hb_004032_320

Information

Type -
Description -
Location Contig4032: 313609-319420
Sequence    

Annotation

kegg
ID rcu:RCOM_1602430
description hypothetical protein
nr
ID XP_012073541.1
description PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
swissprot
ID O23144
description Proton pump-interactor 1 OS=Arabidopsis thaliana GN=PPI1 PE=1 SV=2
trembl
ID B9R8V2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40041: 313658-317344 , PASA_asmbl_40042: 317349-319212
cDNA
(Sanger)
(ID:Location)		 021_K23.ab1: 313658-313936

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_320 0.0 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
2 Hb_002684_020 0.0857186722 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
3 Hb_001102_070 0.0944897155 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
4 Hb_000453_030 0.0953744229 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
5 Hb_001799_160 0.100698564 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_001633_200 0.1044187492 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
7 Hb_000566_050 0.1050530787 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
8 Hb_000260_460 0.1058448388 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
9 Hb_000739_240 0.1122194756 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_002783_190 0.1132375593 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
11 Hb_001301_270 0.1138844736 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
12 Hb_005062_060 0.1145769272 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
13 Hb_000317_040 0.1154878015 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
14 Hb_006120_050 0.1160190824 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
15 Hb_000724_020 0.1170238345 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
16 Hb_001703_040 0.1172970557 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
17 Hb_011377_040 0.1177781849 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
18 Hb_003228_100 0.1182418421 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
19 Hb_000320_190 0.1183000143 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
20 Hb_002552_040 0.118434762 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_320 Hb_004032_320 Hb_002684_020 Hb_002684_020 Hb_004032_320--Hb_002684_020 Hb_001102_070 Hb_001102_070 Hb_004032_320--Hb_001102_070 Hb_000453_030 Hb_000453_030 Hb_004032_320--Hb_000453_030 Hb_001799_160 Hb_001799_160 Hb_004032_320--Hb_001799_160 Hb_001633_200 Hb_001633_200 Hb_004032_320--Hb_001633_200 Hb_000566_050 Hb_000566_050 Hb_004032_320--Hb_000566_050 Hb_004324_360 Hb_004324_360 Hb_002684_020--Hb_004324_360 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_000788_030 Hb_000788_030 Hb_002684_020--Hb_000788_030 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030 Hb_000579_080 Hb_000579_080 Hb_001102_070--Hb_000579_080 Hb_000880_070 Hb_000880_070 Hb_001102_070--Hb_000880_070 Hb_001102_070--Hb_002684_020 Hb_016448_010 Hb_016448_010 Hb_001102_070--Hb_016448_010 Hb_000086_270 Hb_000086_270 Hb_001102_070--Hb_000086_270 Hb_000453_030--Hb_002684_020 Hb_001279_020 Hb_001279_020 Hb_000453_030--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000453_030--Hb_001396_020 Hb_000453_030--Hb_006970_020 Hb_005062_060 Hb_005062_060 Hb_000453_030--Hb_005062_060 Hb_000318_220 Hb_000318_220 Hb_001799_160--Hb_000318_220 Hb_003498_100 Hb_003498_100 Hb_001799_160--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_001799_160--Hb_000120_890 Hb_001504_010 Hb_001504_010 Hb_001799_160--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_001799_160--Hb_007483_070 Hb_001053_190 Hb_001053_190 Hb_001799_160--Hb_001053_190 Hb_001507_120 Hb_001507_120 Hb_001633_200--Hb_001507_120 Hb_000705_230 Hb_000705_230 Hb_001633_200--Hb_000705_230 Hb_000395_280 Hb_000395_280 Hb_001633_200--Hb_000395_280 Hb_000197_020 Hb_000197_020 Hb_001633_200--Hb_000197_020 Hb_010672_020 Hb_010672_020 Hb_001633_200--Hb_010672_020 Hb_003777_200 Hb_003777_200 Hb_001633_200--Hb_003777_200 Hb_012286_020 Hb_012286_020 Hb_000566_050--Hb_012286_020 Hb_004003_030 Hb_004003_030 Hb_000566_050--Hb_004003_030 Hb_021576_150 Hb_021576_150 Hb_000566_050--Hb_021576_150 Hb_000566_050--Hb_001799_160 Hb_171554_010 Hb_171554_010 Hb_000566_050--Hb_171554_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57921 5.08778 16.6862 11.3094 4.55784 4.77705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28509 2.42886 8.65571 5.89883 11.3224

CAGE analysis