Hb_001102_070

Information

Type transcription factor
Description TF Family: STAT
Location Contig1102: 49907-56829
Sequence    

Annotation

kegg
ID rcu:RCOM_1182710
description hypothetical protein
nr
ID XP_002528483.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SR64
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1182710 PE=4 SV=1
Gene Ontology
ID GO:0005634
description sh2 domain protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03131: 49709-51347 , PASA_asmbl_03132: 55387-56755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_070 0.0 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
2 Hb_004032_320 0.0944897155 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
3 Hb_000579_080 0.0952928224 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
4 Hb_000880_070 0.0968293673 - - gamma-tubulin complex component, putative [Ricinus communis]
5 Hb_002684_020 0.0986899042 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
6 Hb_016448_010 0.1001769868 - - Protein MYG1, putative [Ricinus communis]
7 Hb_000086_270 0.1009670326 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
8 Hb_000739_240 0.1020363378 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
9 Hb_006438_020 0.1035073728 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
10 Hb_000620_020 0.1046970853 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
11 Hb_012438_030 0.105810115 - - PREDICTED: protein sym-1 [Jatropha curcas]
12 Hb_000229_050 0.1086192016 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
13 Hb_002871_040 0.1091463719 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
14 Hb_000663_080 0.1094107641 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
15 Hb_005649_100 0.1122035887 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
16 Hb_000724_020 0.1134109445 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
17 Hb_003228_100 0.1156385149 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
18 Hb_001703_040 0.1162789791 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
19 Hb_012633_050 0.1167221594 - - zinc finger protein, putative [Ricinus communis]
20 Hb_005333_060 0.1180794575 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]

Gene co-expression network

sample Hb_001102_070 Hb_001102_070 Hb_004032_320 Hb_004032_320 Hb_001102_070--Hb_004032_320 Hb_000579_080 Hb_000579_080 Hb_001102_070--Hb_000579_080 Hb_000880_070 Hb_000880_070 Hb_001102_070--Hb_000880_070 Hb_002684_020 Hb_002684_020 Hb_001102_070--Hb_002684_020 Hb_016448_010 Hb_016448_010 Hb_001102_070--Hb_016448_010 Hb_000086_270 Hb_000086_270 Hb_001102_070--Hb_000086_270 Hb_004032_320--Hb_002684_020 Hb_000453_030 Hb_000453_030 Hb_004032_320--Hb_000453_030 Hb_001799_160 Hb_001799_160 Hb_004032_320--Hb_001799_160 Hb_001633_200 Hb_001633_200 Hb_004032_320--Hb_001633_200 Hb_000566_050 Hb_000566_050 Hb_004032_320--Hb_000566_050 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_012633_050 Hb_012633_050 Hb_000579_080--Hb_012633_050 Hb_000229_050 Hb_000229_050 Hb_000579_080--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_000579_080--Hb_008206_080 Hb_008304_020 Hb_008304_020 Hb_000579_080--Hb_008304_020 Hb_000321_140 Hb_000321_140 Hb_000880_070--Hb_000321_140 Hb_004339_040 Hb_004339_040 Hb_000880_070--Hb_004339_040 Hb_004100_050 Hb_004100_050 Hb_000880_070--Hb_004100_050 Hb_002055_020 Hb_002055_020 Hb_000880_070--Hb_002055_020 Hb_000254_100 Hb_000254_100 Hb_000880_070--Hb_000254_100 Hb_001824_080 Hb_001824_080 Hb_000880_070--Hb_001824_080 Hb_004324_360 Hb_004324_360 Hb_002684_020--Hb_004324_360 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_000788_030 Hb_000788_030 Hb_002684_020--Hb_000788_030 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030 Hb_003506_030 Hb_003506_030 Hb_016448_010--Hb_003506_030 Hb_016448_010--Hb_021596_020 Hb_016448_010--Hb_012438_030 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010 Hb_006120_040 Hb_006120_040 Hb_000086_270--Hb_006120_040 Hb_000327_330 Hb_000327_330 Hb_000086_270--Hb_000327_330 Hb_002249_020 Hb_002249_020 Hb_000086_270--Hb_002249_020 Hb_000663_080 Hb_000663_080 Hb_000086_270--Hb_000663_080 Hb_006438_020 Hb_006438_020 Hb_000086_270--Hb_006438_020 Hb_000086_270--Hb_016448_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11593 1.55852 5.13862 2.0331 1.06356 1.41391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.835723 0.686838 1.78123 2.08983 2.26517

CAGE analysis