Hb_001799_160

Information

Type -
Description -
Location Contig1799: 139826-148660
Sequence    

Annotation

kegg
ID rcu:RCOM_1608150
description hypothetical protein
nr
ID XP_012083704.1
description PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID F4HVW5
description Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic OS=Arabidopsis thaliana GN=VAD1 PE=1 SV=1
trembl
ID A0A067K9A7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14631 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17390: 142441-147573 , PASA_asmbl_17391: 142823-143147 , PASA_asmbl_17392: 144069-144207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_160 0.0 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000318_220 0.0708671699 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003498_100 0.0734837999 - - component of oligomeric golgi complex, putative [Ricinus communis]
4 Hb_000120_890 0.0781377866 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
5 Hb_001504_010 0.0810143613 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
6 Hb_007483_070 0.0826640948 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
7 Hb_001053_190 0.0831043662 - - ADP,ATP carrier protein, putative [Ricinus communis]
8 Hb_001703_040 0.0839809358 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
9 Hb_006438_020 0.0847875385 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
10 Hb_021576_150 0.0854788693 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
11 Hb_000788_030 0.0863983826 - - PREDICTED: dynamin-2A [Jatropha curcas]
12 Hb_019654_050 0.0872686721 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
13 Hb_000476_060 0.0908449588 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
14 Hb_000260_460 0.0916505518 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
15 Hb_001279_190 0.0921473431 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
16 Hb_003449_100 0.0925046653 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
17 Hb_089839_010 0.0939095926 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
18 Hb_061256_010 0.0941787688 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
19 Hb_013726_050 0.0943644257 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
20 Hb_000579_080 0.0946314997 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_001799_160 Hb_001799_160 Hb_000318_220 Hb_000318_220 Hb_001799_160--Hb_000318_220 Hb_003498_100 Hb_003498_100 Hb_001799_160--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_001799_160--Hb_000120_890 Hb_001504_010 Hb_001504_010 Hb_001799_160--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_001799_160--Hb_007483_070 Hb_001053_190 Hb_001053_190 Hb_001799_160--Hb_001053_190 Hb_000327_330 Hb_000327_330 Hb_000318_220--Hb_000327_330 Hb_003883_010 Hb_003883_010 Hb_000318_220--Hb_003883_010 Hb_002218_020 Hb_002218_020 Hb_000318_220--Hb_002218_020 Hb_000318_220--Hb_001504_010 Hb_000318_220--Hb_001053_190 Hb_003498_100--Hb_000120_890 Hb_178968_060 Hb_178968_060 Hb_003498_100--Hb_178968_060 Hb_089839_010 Hb_089839_010 Hb_003498_100--Hb_089839_010 Hb_001279_190 Hb_001279_190 Hb_003498_100--Hb_001279_190 Hb_000703_190 Hb_000703_190 Hb_003498_100--Hb_000703_190 Hb_000476_060 Hb_000476_060 Hb_000120_890--Hb_000476_060 Hb_000120_890--Hb_001504_010 Hb_000120_890--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_000120_890--Hb_008304_020 Hb_018790_020 Hb_018790_020 Hb_000120_890--Hb_018790_020 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_007483_070--Hb_001279_190 Hb_007483_070--Hb_008304_020 Hb_007483_070--Hb_000815_300 Hb_007483_070--Hb_000120_890 Hb_011716_010 Hb_011716_010 Hb_007483_070--Hb_011716_010 Hb_002686_080 Hb_002686_080 Hb_001053_190--Hb_002686_080 Hb_003540_050 Hb_003540_050 Hb_001053_190--Hb_003540_050 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_016448_010 Hb_016448_010 Hb_001053_190--Hb_016448_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.64584 6.07021 16.2526 11.4888 4.61228 2.74415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.80077 4.36604 5.62416 5.3782 8.777

CAGE analysis