Hb_002055_020

Information

Type -
Description -
Location Contig2055: 7648-8745
Sequence    

Annotation

kegg
ID tcc:TCM_041217
description P-loop containing nucleoside triphosphate hydrolases superfamily protein
nr
ID XP_012066353.1
description PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
swissprot
ID Q9SJF1
description GTPase LSG1-2 OS=Arabidopsis thaliana GN=LSG1-2 PE=1 SV=1
trembl
ID A0A067LFS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23906 PE=4 SV=1
Gene Ontology
ID GO:0005525
description large subunit gtpase 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21200: 7545-26505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002055_020 0.0 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
2 Hb_000321_140 0.0518832582 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_001009_280 0.0691547877 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
4 Hb_000254_100 0.0716316015 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
5 Hb_000567_070 0.0728871605 - - autophagy protein, putative [Ricinus communis]
6 Hb_000390_230 0.0751601533 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
7 Hb_170416_010 0.075835019 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
8 Hb_000880_070 0.0771179234 - - gamma-tubulin complex component, putative [Ricinus communis]
9 Hb_001348_080 0.0793580947 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
10 Hb_000610_040 0.0800463262 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
11 Hb_000510_360 0.0831662069 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
12 Hb_007765_100 0.0831783642 - - PREDICTED: helicase SKI2W [Jatropha curcas]
13 Hb_183510_020 0.0833183875 - - coated vesicle membrane protein, putative [Ricinus communis]
14 Hb_007894_150 0.084760627 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
15 Hb_003186_020 0.085560097 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
16 Hb_001226_150 0.0855711448 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
17 Hb_001998_240 0.0872999151 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
18 Hb_006483_110 0.0874487842 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
19 Hb_085742_010 0.0878933027 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
20 Hb_004994_010 0.0881176936 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002055_020 Hb_002055_020 Hb_000321_140 Hb_000321_140 Hb_002055_020--Hb_000321_140 Hb_001009_280 Hb_001009_280 Hb_002055_020--Hb_001009_280 Hb_000254_100 Hb_000254_100 Hb_002055_020--Hb_000254_100 Hb_000567_070 Hb_000567_070 Hb_002055_020--Hb_000567_070 Hb_000390_230 Hb_000390_230 Hb_002055_020--Hb_000390_230 Hb_170416_010 Hb_170416_010 Hb_002055_020--Hb_170416_010 Hb_000085_170 Hb_000085_170 Hb_000321_140--Hb_000085_170 Hb_000321_140--Hb_001009_280 Hb_000610_040 Hb_000610_040 Hb_000321_140--Hb_000610_040 Hb_000510_360 Hb_000510_360 Hb_000321_140--Hb_000510_360 Hb_000880_070 Hb_000880_070 Hb_000321_140--Hb_000880_070 Hb_183510_020 Hb_183510_020 Hb_001009_280--Hb_183510_020 Hb_002046_010 Hb_002046_010 Hb_001009_280--Hb_002046_010 Hb_000617_230 Hb_000617_230 Hb_001009_280--Hb_000617_230 Hb_027506_010 Hb_027506_010 Hb_001009_280--Hb_027506_010 Hb_000847_080 Hb_000847_080 Hb_000254_100--Hb_000847_080 Hb_004109_120 Hb_004109_120 Hb_000254_100--Hb_004109_120 Hb_030414_040 Hb_030414_040 Hb_000254_100--Hb_030414_040 Hb_000254_100--Hb_000567_070 Hb_003186_020 Hb_003186_020 Hb_000254_100--Hb_003186_020 Hb_001824_080 Hb_001824_080 Hb_000254_100--Hb_001824_080 Hb_007821_020 Hb_007821_020 Hb_000567_070--Hb_007821_020 Hb_000567_070--Hb_000390_230 Hb_000567_070--Hb_003186_020 Hb_006483_110 Hb_006483_110 Hb_000567_070--Hb_006483_110 Hb_000115_280 Hb_000115_280 Hb_000567_070--Hb_000115_280 Hb_000836_410 Hb_000836_410 Hb_000390_230--Hb_000836_410 Hb_004994_010 Hb_004994_010 Hb_000390_230--Hb_004994_010 Hb_000390_230--Hb_000115_280 Hb_000563_130 Hb_000563_130 Hb_000390_230--Hb_000563_130 Hb_138435_010 Hb_138435_010 Hb_000390_230--Hb_138435_010 Hb_001761_120 Hb_001761_120 Hb_170416_010--Hb_001761_120 Hb_001226_150 Hb_001226_150 Hb_170416_010--Hb_001226_150 Hb_007765_100 Hb_007765_100 Hb_170416_010--Hb_007765_100 Hb_007007_120 Hb_007007_120 Hb_170416_010--Hb_007007_120 Hb_003531_080 Hb_003531_080 Hb_170416_010--Hb_003531_080 Hb_010931_070 Hb_010931_070 Hb_170416_010--Hb_010931_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1005 16.709 29.0319 13.3511 16.3145 14.241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.89085 12.7531 16.6387 24.0635 21.4277

CAGE analysis