Hb_000453_030

Information

Type -
Description -
Location Contig453: 19269-22850
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24720g
description POPTRDRAFT_549167; Protein kinase capable of phosphorylating tyrosine family protein
nr
ID XP_002299870.1
description Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID B9GJM9
description Protein kinase capable of phosphorylating tyrosine family protein OS=Populus trichocarpa GN=POPTR_0001s24720g PE=3 SV=1
Gene Ontology
ID GO:0004674
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43246: 19230-22691 , PASA_asmbl_43247: 19334-22776 , PASA_asmbl_43248: 19334-22701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_030 0.0 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
2 Hb_002684_020 0.0820978301 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
3 Hb_001279_020 0.0910735067 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
4 Hb_001396_020 0.0924853791 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
5 Hb_006970_020 0.0942134363 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
6 Hb_005062_060 0.0949542244 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
7 Hb_004032_320 0.0953744229 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
8 Hb_000748_090 0.0966794017 - - glucose inhibited division protein A, putative [Ricinus communis]
9 Hb_004324_360 0.098927446 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
10 Hb_000320_190 0.1011334286 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_001301_270 0.102247137 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
12 Hb_000862_100 0.1024285846 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
13 Hb_089246_010 0.1045869703 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
14 Hb_011377_040 0.1058679326 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
15 Hb_012799_050 0.1058732906 - - PREDICTED: remorin [Jatropha curcas]
16 Hb_002600_070 0.1071214237 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
17 Hb_021596_020 0.1072194748 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
18 Hb_168893_030 0.1077932384 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
19 Hb_022693_130 0.1081969882 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_006846_170 0.1088233663 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]

Gene co-expression network

sample Hb_000453_030 Hb_000453_030 Hb_002684_020 Hb_002684_020 Hb_000453_030--Hb_002684_020 Hb_001279_020 Hb_001279_020 Hb_000453_030--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000453_030--Hb_001396_020 Hb_006970_020 Hb_006970_020 Hb_000453_030--Hb_006970_020 Hb_005062_060 Hb_005062_060 Hb_000453_030--Hb_005062_060 Hb_004032_320 Hb_004032_320 Hb_000453_030--Hb_004032_320 Hb_004324_360 Hb_004324_360 Hb_002684_020--Hb_004324_360 Hb_002684_020--Hb_006970_020 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_000788_030 Hb_000788_030 Hb_002684_020--Hb_000788_030 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030 Hb_001279_020--Hb_001396_020 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_001279_020--Hb_029552_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_000529_130 Hb_000529_130 Hb_001279_020--Hb_000529_130 Hb_000300_560 Hb_000300_560 Hb_001396_020--Hb_000300_560 Hb_000482_050 Hb_000482_050 Hb_001396_020--Hb_000482_050 Hb_002600_070 Hb_002600_070 Hb_001396_020--Hb_002600_070 Hb_001396_020--Hb_000529_130 Hb_012779_080 Hb_012779_080 Hb_001396_020--Hb_012779_080 Hb_006970_020--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_000078_140 Hb_000078_140 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020 Hb_022693_130 Hb_022693_130 Hb_005062_060--Hb_022693_130 Hb_002053_050 Hb_002053_050 Hb_005062_060--Hb_002053_050 Hb_160271_010 Hb_160271_010 Hb_005062_060--Hb_160271_010 Hb_005656_070 Hb_005656_070 Hb_005062_060--Hb_005656_070 Hb_000107_250 Hb_000107_250 Hb_005062_060--Hb_000107_250 Hb_004032_320--Hb_002684_020 Hb_001102_070 Hb_001102_070 Hb_004032_320--Hb_001102_070 Hb_001799_160 Hb_001799_160 Hb_004032_320--Hb_001799_160 Hb_001633_200 Hb_001633_200 Hb_004032_320--Hb_001633_200 Hb_000566_050 Hb_000566_050 Hb_004032_320--Hb_000566_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.75663 12.8715 27.6611 19.0763 8.63387 14.2555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88292 4.47198 11.8308 12.0323 27.8591

CAGE analysis