Hb_005656_070

Information

Type -
Description -
Location Contig5656: 36193-40701
Sequence    

Annotation

kegg
ID rcu:RCOM_0204960
description DNA photolyase, putative (EC:4.1.99.3)
nr
ID XP_012076312.1
description PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID Q84KJ5
description Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2
trembl
ID A0A067KBB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07003 PE=4 SV=1
Gene Ontology
ID GO:0003904
description cryptochrome chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49013: 36354-40660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_070 0.0 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_002053_050 0.0876703321 - - Kinesin heavy chain, putative [Ricinus communis]
3 Hb_005062_060 0.0914215533 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
4 Hb_004907_090 0.1105681576 - - ATP binding protein, putative [Ricinus communis]
5 Hb_007594_080 0.119188674 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
6 Hb_022693_130 0.1213529427 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_004158_050 0.1232062984 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
8 Hb_160271_010 0.1286959411 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
9 Hb_073973_120 0.1291500921 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000071_150 0.1296584162 - - Stearoy-ACP desaturase [Ricinus communis]
11 Hb_000866_070 0.1334548781 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
12 Hb_003687_080 0.1345993388 - - PREDICTED: casein kinase I-like [Jatropha curcas]
13 Hb_006006_060 0.1354834669 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
14 Hb_006816_190 0.1357665986 - - calreticulin family protein [Populus trichocarpa]
15 Hb_000320_190 0.1366296517 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
16 Hb_004013_030 0.1372335279 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
17 Hb_004116_160 0.1379141049 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
18 Hb_002488_010 0.138112062 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
19 Hb_010620_050 0.1391722421 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
20 Hb_000645_180 0.1396026892 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_005656_070 Hb_005656_070 Hb_002053_050 Hb_002053_050 Hb_005656_070--Hb_002053_050 Hb_005062_060 Hb_005062_060 Hb_005656_070--Hb_005062_060 Hb_004907_090 Hb_004907_090 Hb_005656_070--Hb_004907_090 Hb_007594_080 Hb_007594_080 Hb_005656_070--Hb_007594_080 Hb_022693_130 Hb_022693_130 Hb_005656_070--Hb_022693_130 Hb_004158_050 Hb_004158_050 Hb_005656_070--Hb_004158_050 Hb_002053_050--Hb_005062_060 Hb_000107_250 Hb_000107_250 Hb_002053_050--Hb_000107_250 Hb_002053_050--Hb_022693_130 Hb_000815_230 Hb_000815_230 Hb_002053_050--Hb_000815_230 Hb_073973_120 Hb_073973_120 Hb_002053_050--Hb_073973_120 Hb_005062_060--Hb_022693_130 Hb_160271_010 Hb_160271_010 Hb_005062_060--Hb_160271_010 Hb_005062_060--Hb_000107_250 Hb_000453_030 Hb_000453_030 Hb_005062_060--Hb_000453_030 Hb_004052_180 Hb_004052_180 Hb_004907_090--Hb_004052_180 Hb_004907_090--Hb_007594_080 Hb_004013_030 Hb_004013_030 Hb_004907_090--Hb_004013_030 Hb_006816_190 Hb_006816_190 Hb_004907_090--Hb_006816_190 Hb_000001_090 Hb_000001_090 Hb_004907_090--Hb_000001_090 Hb_002686_300 Hb_002686_300 Hb_004907_090--Hb_002686_300 Hb_001279_020 Hb_001279_020 Hb_007594_080--Hb_001279_020 Hb_010620_050 Hb_010620_050 Hb_007594_080--Hb_010620_050 Hb_001663_130 Hb_001663_130 Hb_007594_080--Hb_001663_130 Hb_000302_190 Hb_000302_190 Hb_007594_080--Hb_000302_190 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_001689_050 Hb_001689_050 Hb_007594_080--Hb_001689_050 Hb_022693_130--Hb_160271_010 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_000108_020 Hb_000108_020 Hb_022693_130--Hb_000108_020 Hb_022693_130--Hb_000107_250 Hb_002026_090 Hb_002026_090 Hb_004158_050--Hb_002026_090 Hb_000327_330 Hb_000327_330 Hb_004158_050--Hb_000327_330 Hb_001623_490 Hb_001623_490 Hb_004158_050--Hb_001623_490 Hb_003687_080 Hb_003687_080 Hb_004158_050--Hb_003687_080 Hb_004158_050--Hb_007594_080 Hb_001160_110 Hb_001160_110 Hb_004158_050--Hb_001160_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.19808 11.7949 40.3319 33.5978 12.0932 21.3816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.11748 4.93523 6.92559 6.04647 31.2117

CAGE analysis