Hb_000529_130

Information

Type -
Description -
Location Contig529: 172395-191518
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14320g
description hypothetical protein
nr
ID XP_006380807.1
description hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
swissprot
ID Q9LX99
description Kinesin-like protein KCA1 OS=Arabidopsis thaliana GN=KCA1 PE=1 SV=1
trembl
ID U5G8M6
description Kinesin-like protein OS=Populus trichocarpa GN=POPTR_0007s14320g PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kca2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47235: 172236-215987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_130 0.0 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
2 Hb_004994_350 0.0611650045 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
3 Hb_000562_070 0.0618496674 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
4 Hb_029552_020 0.0732962061 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001279_020 0.0775599422 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
6 Hb_001396_020 0.0781457084 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
7 Hb_003849_160 0.0855597852 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
8 Hb_001277_340 0.0865958755 - - aldo/keto reductase, putative [Ricinus communis]
9 Hb_003462_060 0.0903381179 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
10 Hb_007594_080 0.0918763266 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
11 Hb_002600_070 0.0949845857 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
12 Hb_001140_180 0.0953277194 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
13 Hb_002447_050 0.0958535367 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000482_050 0.0968372612 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
15 Hb_010620_050 0.0985241786 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
16 Hb_000771_170 0.1008020176 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_005305_130 0.1017035954 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
18 Hb_000997_100 0.1049483848 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
19 Hb_004116_160 0.1097211105 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
20 Hb_001998_210 0.1099226151 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000529_130 Hb_000529_130 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000562_070 Hb_000562_070 Hb_000529_130--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_000529_130--Hb_029552_020 Hb_001279_020 Hb_001279_020 Hb_000529_130--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000529_130--Hb_001396_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_004994_350--Hb_029552_020 Hb_001178_030 Hb_001178_030 Hb_004994_350--Hb_001178_030 Hb_004994_350--Hb_001396_020 Hb_002600_070 Hb_002600_070 Hb_004994_350--Hb_002600_070 Hb_000748_090 Hb_000748_090 Hb_004994_350--Hb_000748_090 Hb_001277_340 Hb_001277_340 Hb_000562_070--Hb_001277_340 Hb_000562_070--Hb_001279_020 Hb_000562_070--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_000562_070--Hb_005305_130 Hb_000771_170 Hb_000771_170 Hb_000562_070--Hb_000771_170 Hb_001140_180 Hb_001140_180 Hb_029552_020--Hb_001140_180 Hb_029552_020--Hb_001279_020 Hb_029552_020--Hb_005305_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_001279_020--Hb_001396_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_000300_560 Hb_000300_560 Hb_001396_020--Hb_000300_560 Hb_000482_050 Hb_000482_050 Hb_001396_020--Hb_000482_050 Hb_001396_020--Hb_002600_070 Hb_012779_080 Hb_012779_080 Hb_001396_020--Hb_012779_080 Hb_003849_160--Hb_029552_020 Hb_001999_320 Hb_001999_320 Hb_003849_160--Hb_001999_320 Hb_002675_080 Hb_002675_080 Hb_003849_160--Hb_002675_080 Hb_009078_020 Hb_009078_020 Hb_003849_160--Hb_009078_020 Hb_000968_060 Hb_000968_060 Hb_003849_160--Hb_000968_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55495 14.2988 20.8295 15.1246 7.14777 7.04208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.72834 2.46175 3.62232 5.78992 22.7225

CAGE analysis