Hb_004994_350

Information

Type -
Description -
Location Contig4994: 270132-272686
Sequence    

Annotation

kegg
ID rcu:RCOM_1615110
description hypothetical protein
nr
ID XP_012083409.1
description PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
swissprot
ID Q9M2D2
description UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana GN=At3g61320 PE=2 SV=2
trembl
ID A0A067K8P6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14411 PE=4 SV=1
Gene Ontology
ID GO:0016021
description upf0187 protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45665: 270388-272935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_350 0.0 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
2 Hb_000529_130 0.0611650045 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
3 Hb_029552_020 0.0858426171 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001178_030 0.0913713648 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
5 Hb_001396_020 0.0923480509 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
6 Hb_002600_070 0.0927266797 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
7 Hb_000748_090 0.0963046179 - - glucose inhibited division protein A, putative [Ricinus communis]
8 Hb_000562_070 0.096493342 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
9 Hb_002249_030 0.0983305836 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
10 Hb_003462_060 0.0983394517 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
11 Hb_000008_280 0.0988438062 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
12 Hb_005305_130 0.0989841404 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
13 Hb_000922_060 0.1006072333 - - kinesin light chain, putative [Ricinus communis]
14 Hb_001279_020 0.1023189665 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
15 Hb_000482_050 0.1035568701 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
16 Hb_001439_070 0.1043445296 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_001998_210 0.1045669415 - - unnamed protein product [Coffea canephora]
18 Hb_003682_070 0.1062741935 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
19 Hb_011457_140 0.1065534463 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
20 Hb_001396_240 0.1078969948 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004994_350 Hb_004994_350 Hb_000529_130 Hb_000529_130 Hb_004994_350--Hb_000529_130 Hb_029552_020 Hb_029552_020 Hb_004994_350--Hb_029552_020 Hb_001178_030 Hb_001178_030 Hb_004994_350--Hb_001178_030 Hb_001396_020 Hb_001396_020 Hb_004994_350--Hb_001396_020 Hb_002600_070 Hb_002600_070 Hb_004994_350--Hb_002600_070 Hb_000748_090 Hb_000748_090 Hb_004994_350--Hb_000748_090 Hb_000562_070 Hb_000562_070 Hb_000529_130--Hb_000562_070 Hb_000529_130--Hb_029552_020 Hb_001279_020 Hb_001279_020 Hb_000529_130--Hb_001279_020 Hb_000529_130--Hb_001396_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_001140_180 Hb_001140_180 Hb_029552_020--Hb_001140_180 Hb_029552_020--Hb_001279_020 Hb_005305_130 Hb_005305_130 Hb_029552_020--Hb_005305_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_029552_020--Hb_000562_070 Hb_111552_010 Hb_111552_010 Hb_001178_030--Hb_111552_010 Hb_000586_020 Hb_000586_020 Hb_001178_030--Hb_000586_020 Hb_001178_030--Hb_005305_130 Hb_000806_030 Hb_000806_030 Hb_001178_030--Hb_000806_030 Hb_002249_030 Hb_002249_030 Hb_001178_030--Hb_002249_030 Hb_000404_030 Hb_000404_030 Hb_001178_030--Hb_000404_030 Hb_001396_020--Hb_001279_020 Hb_000300_560 Hb_000300_560 Hb_001396_020--Hb_000300_560 Hb_000482_050 Hb_000482_050 Hb_001396_020--Hb_000482_050 Hb_001396_020--Hb_002600_070 Hb_012779_080 Hb_012779_080 Hb_001396_020--Hb_012779_080 Hb_002600_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_002600_070--Hb_007012_030 Hb_000771_170 Hb_000771_170 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_002600_070--Hb_000482_050 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060 Hb_000748_090--Hb_007012_030 Hb_068804_090 Hb_068804_090 Hb_000748_090--Hb_068804_090 Hb_004324_360 Hb_004324_360 Hb_000748_090--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_000748_090--Hb_021596_020 Hb_000748_090--Hb_000482_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.21092 12.8801 15.0251 12.6846 4.11831 6.27809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43799 2.44329 4.34326 5.34578 20.7381

CAGE analysis