Hb_001140_180

Information

Type -
Description -
Location Contig1140: 210303-212485
Sequence    

Annotation

kegg
ID rcu:RCOM_1496030
description cytochrome B561, putative
nr
ID XP_012090266.1
description PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
swissprot
ID Q8L856
description Transmembrane ascorbate ferrireductase 1 OS=Arabidopsis thaliana GN=CYB561A PE=1 SV=1
trembl
ID A0A067JQL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26116 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane ascorbate ferrireductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04193: 210302-212484
cDNA
(Sanger)
(ID:Location)		 021_E20.ab1: 210582-212484 , 021_F05.ab1: 210552-212484

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_180 0.0 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
2 Hb_029552_020 0.0614860627 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002828_060 0.0806527241 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
4 Hb_001279_020 0.0807433794 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
5 Hb_000562_070 0.0855179248 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
6 Hb_001053_080 0.0907630733 - - OsCesA3 protein [Morus notabilis]
7 Hb_001411_130 0.0930934362 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
8 Hb_000482_050 0.0935703905 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
9 Hb_005701_090 0.0938824954 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000984_140 0.0941047868 - - PREDICTED: xylulose kinase [Jatropha curcas]
11 Hb_004225_040 0.0941289898 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
12 Hb_000529_130 0.0953277194 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
13 Hb_006916_030 0.0989092303 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
14 Hb_005305_130 0.0999337848 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
15 Hb_003462_060 0.1013672903 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
16 Hb_000862_100 0.1030595146 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
17 Hb_000300_560 0.1042649052 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
18 Hb_000302_190 0.1042680654 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
19 Hb_001396_020 0.1063067222 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
20 Hb_003849_160 0.1064339128 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]

Gene co-expression network

sample Hb_001140_180 Hb_001140_180 Hb_029552_020 Hb_029552_020 Hb_001140_180--Hb_029552_020 Hb_002828_060 Hb_002828_060 Hb_001140_180--Hb_002828_060 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_000562_070 Hb_000562_070 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130 Hb_029552_020--Hb_001279_020 Hb_005305_130 Hb_005305_130 Hb_029552_020--Hb_005305_130 Hb_000529_130 Hb_000529_130 Hb_029552_020--Hb_000529_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_029552_020--Hb_000562_070 Hb_003490_060 Hb_003490_060 Hb_002828_060--Hb_003490_060 Hb_068079_010 Hb_068079_010 Hb_002828_060--Hb_068079_010 Hb_000482_050 Hb_000482_050 Hb_002828_060--Hb_000482_050 Hb_000510_190 Hb_000510_190 Hb_002828_060--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_002828_060--Hb_002249_080 Hb_001396_020 Hb_001396_020 Hb_001279_020--Hb_001396_020 Hb_001279_020--Hb_000562_070 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_001279_020--Hb_000529_130 Hb_000562_070--Hb_000529_130 Hb_001277_340 Hb_001277_340 Hb_000562_070--Hb_001277_340 Hb_000562_070--Hb_005305_130 Hb_000771_170 Hb_000771_170 Hb_000562_070--Hb_000771_170 Hb_001053_080--Hb_001279_090 Hb_006588_160 Hb_006588_160 Hb_001053_080--Hb_006588_160 Hb_000001_090 Hb_000001_090 Hb_001053_080--Hb_000001_090 Hb_000358_210 Hb_000358_210 Hb_001053_080--Hb_000358_210 Hb_002942_230 Hb_002942_230 Hb_001411_130--Hb_002942_230 Hb_001411_130--Hb_001279_020 Hb_003847_040 Hb_003847_040 Hb_001411_130--Hb_003847_040 Hb_000959_300 Hb_000959_300 Hb_001411_130--Hb_000959_300 Hb_002217_080 Hb_002217_080 Hb_001411_130--Hb_002217_080 Hb_001411_130--Hb_029552_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9056 43.7106 85.9068 71.2374 37.0221 35.0233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1771 9.17283 10.9826 43.4485 102.32

CAGE analysis