Hb_002217_080

Information

Type -
Description -
Location Contig2217: 95324-99598
Sequence    

Annotation

kegg
ID rcu:RCOM_1002470
description hypothetical protein
nr
ID XP_012082551.1
description PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
swissprot
ID Q9ASW1
description Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16 PE=2 SV=1
trembl
ID A0A067JZG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16636 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -galactosyltransferase 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22888: 94491-95394 , PASA_asmbl_22889: 95423-96843 , PASA_asmbl_22890: 97181-99614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_080 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
2 Hb_002942_230 0.0670433818 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
3 Hb_001411_130 0.0904242507 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
4 Hb_000418_020 0.0923309063 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
5 Hb_002687_200 0.0987774928 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000866_070 0.0991472062 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
7 Hb_000622_330 0.1039811545 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
8 Hb_000638_060 0.1046896385 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
9 Hb_004218_130 0.1073939938 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
10 Hb_003847_040 0.1096393807 - - adenosine diphosphatase, putative [Ricinus communis]
11 Hb_003849_120 0.1103095522 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
12 Hb_029584_120 0.1104460882 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
13 Hb_000197_180 0.1105632963 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
14 Hb_000001_090 0.1112462628 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
15 Hb_000926_340 0.1119286057 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
16 Hb_003540_080 0.112071783 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_003929_180 0.1133457374 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
18 Hb_000997_070 0.114051566 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
19 Hb_001195_310 0.1141712211 - - ATP binding protein, putative [Ricinus communis]
20 Hb_002739_120 0.1146682566 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002217_080 Hb_002217_080 Hb_002942_230 Hb_002942_230 Hb_002217_080--Hb_002942_230 Hb_001411_130 Hb_001411_130 Hb_002217_080--Hb_001411_130 Hb_000418_020 Hb_000418_020 Hb_002217_080--Hb_000418_020 Hb_002687_200 Hb_002687_200 Hb_002217_080--Hb_002687_200 Hb_000866_070 Hb_000866_070 Hb_002217_080--Hb_000866_070 Hb_000622_330 Hb_000622_330 Hb_002217_080--Hb_000622_330 Hb_002942_230--Hb_000866_070 Hb_002942_230--Hb_001411_130 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_002942_230--Hb_002687_200 Hb_003540_080 Hb_003540_080 Hb_002942_230--Hb_003540_080 Hb_001279_020 Hb_001279_020 Hb_001411_130--Hb_001279_020 Hb_003847_040 Hb_003847_040 Hb_001411_130--Hb_003847_040 Hb_000959_300 Hb_000959_300 Hb_001411_130--Hb_000959_300 Hb_029552_020 Hb_029552_020 Hb_001411_130--Hb_029552_020 Hb_000256_230 Hb_000256_230 Hb_000418_020--Hb_000256_230 Hb_000665_170 Hb_000665_170 Hb_000418_020--Hb_000665_170 Hb_000418_020--Hb_002687_200 Hb_021576_070 Hb_021576_070 Hb_000418_020--Hb_021576_070 Hb_002739_120 Hb_002739_120 Hb_000418_020--Hb_002739_120 Hb_003777_030 Hb_003777_030 Hb_000418_020--Hb_003777_030 Hb_003680_220 Hb_003680_220 Hb_002687_200--Hb_003680_220 Hb_015884_020 Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_000007_090 Hb_000007_090 Hb_002687_200--Hb_000007_090 Hb_000027_200 Hb_000027_200 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_000866_070--Hb_000001_090 Hb_029584_120 Hb_029584_120 Hb_000866_070--Hb_029584_120 Hb_000968_060 Hb_000968_060 Hb_000866_070--Hb_000968_060 Hb_000866_070--Hb_001411_130 Hb_010050_020 Hb_010050_020 Hb_000622_330--Hb_010050_020 Hb_000928_120 Hb_000928_120 Hb_000622_330--Hb_000928_120 Hb_006120_060 Hb_006120_060 Hb_000622_330--Hb_006120_060 Hb_000000_480 Hb_000000_480 Hb_000622_330--Hb_000000_480 Hb_004522_030 Hb_004522_030 Hb_000622_330--Hb_004522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.788182 3.72374 7.27223 9.96169 2.50337 1.91826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59649 1.31902 1.13473 3.61354 6.39125

CAGE analysis