Hb_001411_130

Information

Type -
Description -
Location Contig1411: 204429-213846
Sequence    

Annotation

kegg
ID cit:102629330
description uncharacterized LOC102629330
nr
ID XP_012068833.1
description PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11132: 204212-208344 , PASA_asmbl_11133: 208770-208939 , PASA_asmbl_11134: 208977-212532 , PASA_asmbl_11135: 212939-213887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001411_130 0.0 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
2 Hb_002942_230 0.0673931691 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
3 Hb_001279_020 0.0867424857 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
4 Hb_003847_040 0.0887676427 - - adenosine diphosphatase, putative [Ricinus communis]
5 Hb_000959_300 0.0895865915 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
6 Hb_002217_080 0.0904242507 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
7 Hb_029552_020 0.0905379935 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001140_180 0.0930934362 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
9 Hb_001053_080 0.0978548633 - - OsCesA3 protein [Morus notabilis]
10 Hb_000866_070 0.0987145356 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
11 Hb_000414_080 0.1016213914 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
12 Hb_000001_090 0.103630219 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
13 Hb_000510_150 0.1038160819 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
14 Hb_014497_010 0.1047447755 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
15 Hb_002849_050 0.1054875222 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
16 Hb_003849_160 0.1078956989 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
17 Hb_001279_090 0.1079759859 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
18 Hb_002687_200 0.1087871571 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007594_080 0.1088034594 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
20 Hb_009296_020 0.1094858088 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001411_130 Hb_001411_130 Hb_002942_230 Hb_002942_230 Hb_001411_130--Hb_002942_230 Hb_001279_020 Hb_001279_020 Hb_001411_130--Hb_001279_020 Hb_003847_040 Hb_003847_040 Hb_001411_130--Hb_003847_040 Hb_000959_300 Hb_000959_300 Hb_001411_130--Hb_000959_300 Hb_002217_080 Hb_002217_080 Hb_001411_130--Hb_002217_080 Hb_029552_020 Hb_029552_020 Hb_001411_130--Hb_029552_020 Hb_002942_230--Hb_002217_080 Hb_000866_070 Hb_000866_070 Hb_002942_230--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_002687_200 Hb_002687_200 Hb_002942_230--Hb_002687_200 Hb_003540_080 Hb_003540_080 Hb_002942_230--Hb_003540_080 Hb_001396_020 Hb_001396_020 Hb_001279_020--Hb_001396_020 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_001279_020--Hb_029552_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_000529_130 Hb_000529_130 Hb_001279_020--Hb_000529_130 Hb_000638_060 Hb_000638_060 Hb_003847_040--Hb_000638_060 Hb_026549_070 Hb_026549_070 Hb_003847_040--Hb_026549_070 Hb_003847_040--Hb_000959_300 Hb_001195_660 Hb_001195_660 Hb_003847_040--Hb_001195_660 Hb_000414_080 Hb_000414_080 Hb_003847_040--Hb_000414_080 Hb_002488_010 Hb_002488_010 Hb_000959_300--Hb_002488_010 Hb_001969_140 Hb_001969_140 Hb_000959_300--Hb_001969_140 Hb_000959_300--Hb_002942_230 Hb_000167_040 Hb_000167_040 Hb_000959_300--Hb_000167_040 Hb_000418_020 Hb_000418_020 Hb_002217_080--Hb_000418_020 Hb_002217_080--Hb_002687_200 Hb_002217_080--Hb_000866_070 Hb_000622_330 Hb_000622_330 Hb_002217_080--Hb_000622_330 Hb_001140_180 Hb_001140_180 Hb_029552_020--Hb_001140_180 Hb_005305_130 Hb_005305_130 Hb_029552_020--Hb_005305_130 Hb_029552_020--Hb_000529_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_029552_020--Hb_000562_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63265 4.62353 9.56446 9.74892 2.74186 2.71824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52747 0.82554 2.13173 4.06746 9.20478

CAGE analysis