Hb_001969_140

Information

Type -
Description -
Location Contig1969: 162981-166169
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17560g
description POPTRDRAFT_548635; hypothetical protein
nr
ID XP_012073276.1
description PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06216 PE=4 SV=1
Gene Ontology
ID GO:0005768
description PREDICTED: uncharacterized protein LOC105634929

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19751: 162597-163752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_140 0.0 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
2 Hb_001195_310 0.0691885139 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000167_040 0.0769452486 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
4 Hb_001216_110 0.0803954806 - - PREDICTED: protein GPR107-like [Jatropha curcas]
5 Hb_000679_040 0.0855708728 - - Cellulose synthase 1 [Theobroma cacao]
6 Hb_011310_050 0.0865931431 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
7 Hb_000959_300 0.0914648203 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
8 Hb_000997_070 0.0986181755 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
9 Hb_020586_010 0.1017667955 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
10 Hb_004899_340 0.1076814434 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_026549_070 0.1078310153 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
12 Hb_028639_030 0.109843788 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
13 Hb_000638_060 0.1153042893 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
14 Hb_116702_010 0.116130252 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
15 Hb_011828_010 0.118454205 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
16 Hb_002164_020 0.1201375342 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002129_020 0.1202054345 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
18 Hb_001493_060 0.1203096889 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
19 Hb_003847_040 0.121713759 - - adenosine diphosphatase, putative [Ricinus communis]
20 Hb_000684_310 0.1218848338 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]

Gene co-expression network

sample Hb_001969_140 Hb_001969_140 Hb_001195_310 Hb_001195_310 Hb_001969_140--Hb_001195_310 Hb_000167_040 Hb_000167_040 Hb_001969_140--Hb_000167_040 Hb_001216_110 Hb_001216_110 Hb_001969_140--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_001969_140--Hb_000679_040 Hb_011310_050 Hb_011310_050 Hb_001969_140--Hb_011310_050 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_001195_310--Hb_000167_040 Hb_001195_310--Hb_000679_040 Hb_020586_010 Hb_020586_010 Hb_001195_310--Hb_020586_010 Hb_000997_070 Hb_000997_070 Hb_001195_310--Hb_000997_070 Hb_001195_310--Hb_011310_050 Hb_000167_040--Hb_011310_050 Hb_000167_040--Hb_000997_070 Hb_000167_040--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_000167_040--Hb_010381_020 Hb_001216_110--Hb_000679_040 Hb_028639_030 Hb_028639_030 Hb_001216_110--Hb_028639_030 Hb_021576_070 Hb_021576_070 Hb_001216_110--Hb_021576_070 Hb_002129_020 Hb_002129_020 Hb_001216_110--Hb_002129_020 Hb_001216_110--Hb_001195_310 Hb_000679_040--Hb_011310_050 Hb_000254_070 Hb_000254_070 Hb_000679_040--Hb_000254_070 Hb_000679_040--Hb_021576_070 Hb_011310_050--Hb_001216_110 Hb_059741_010 Hb_059741_010 Hb_011310_050--Hb_059741_010 Hb_002488_010 Hb_002488_010 Hb_000959_300--Hb_002488_010 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_002942_230 Hb_002942_230 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000959_300--Hb_000167_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.35933 6.78139 10.6945 28.1993 5.82764 4.45621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74075 1.36986 3.7296 7.52751 20.0697

CAGE analysis