Hb_010381_020

Information

Type -
Description -
Location Contig10381: 6019-10606
Sequence    

Annotation

kegg
ID rcu:RCOM_0312330
description Endosomal P24A protein precursor, putative
nr
ID XP_002527407.1
description Endosomal P24A protein precursor, putative [Ricinus communis]
swissprot
ID Q9LIC2
description Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1
trembl
ID B9SN38
description Endosomal P24A protein, putative OS=Ricinus communis GN=RCOM_0312330 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01414: 6069-10471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_020 0.0 - - Endosomal P24A protein precursor, putative [Ricinus communis]
2 Hb_102763_010 0.0489470571 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
3 Hb_010407_030 0.0818877727 - - PREDICTED: casein kinase I-like [Jatropha curcas]
4 Hb_005000_090 0.0890099276 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
5 Hb_000167_040 0.0960812522 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
6 Hb_000997_070 0.0963168574 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
7 Hb_002311_130 0.0963541445 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
8 Hb_001998_220 0.096593209 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
9 Hb_002805_090 0.098065743 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_001195_310 0.1007651222 - - ATP binding protein, putative [Ricinus communis]
11 Hb_007317_020 0.1009331611 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
12 Hb_021977_010 0.1039484784 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
13 Hb_005854_040 0.1045251604 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002072_010 0.1061630129 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001105_130 0.107485417 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
16 Hb_000984_140 0.1107051701 - - PREDICTED: xylulose kinase [Jatropha curcas]
17 Hb_000019_170 0.1110989519 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
18 Hb_000066_040 0.1129295552 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
19 Hb_000254_070 0.113196835 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
20 Hb_002603_040 0.1135800191 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_010381_020 Hb_010381_020 Hb_102763_010 Hb_102763_010 Hb_010381_020--Hb_102763_010 Hb_010407_030 Hb_010407_030 Hb_010381_020--Hb_010407_030 Hb_005000_090 Hb_005000_090 Hb_010381_020--Hb_005000_090 Hb_000167_040 Hb_000167_040 Hb_010381_020--Hb_000167_040 Hb_000997_070 Hb_000997_070 Hb_010381_020--Hb_000997_070 Hb_002311_130 Hb_002311_130 Hb_010381_020--Hb_002311_130 Hb_102763_010--Hb_005000_090 Hb_001998_220 Hb_001998_220 Hb_102763_010--Hb_001998_220 Hb_102763_010--Hb_002311_130 Hb_000019_170 Hb_000019_170 Hb_102763_010--Hb_000019_170 Hb_002805_090 Hb_002805_090 Hb_102763_010--Hb_002805_090 Hb_006949_060 Hb_006949_060 Hb_010407_030--Hb_006949_060 Hb_002739_120 Hb_002739_120 Hb_010407_030--Hb_002739_120 Hb_001009_150 Hb_001009_150 Hb_010407_030--Hb_001009_150 Hb_005854_040 Hb_005854_040 Hb_010407_030--Hb_005854_040 Hb_009078_020 Hb_009078_020 Hb_010407_030--Hb_009078_020 Hb_001366_270 Hb_001366_270 Hb_005000_090--Hb_001366_270 Hb_009476_120 Hb_009476_120 Hb_005000_090--Hb_009476_120 Hb_005000_090--Hb_001998_220 Hb_000492_080 Hb_000492_080 Hb_005000_090--Hb_000492_080 Hb_000674_010 Hb_000674_010 Hb_005000_090--Hb_000674_010 Hb_011310_050 Hb_011310_050 Hb_000167_040--Hb_011310_050 Hb_001195_310 Hb_001195_310 Hb_000167_040--Hb_001195_310 Hb_001969_140 Hb_001969_140 Hb_000167_040--Hb_001969_140 Hb_000167_040--Hb_000997_070 Hb_000679_040 Hb_000679_040 Hb_000167_040--Hb_000679_040 Hb_000562_100 Hb_000562_100 Hb_000997_070--Hb_000562_100 Hb_000997_070--Hb_001195_310 Hb_000997_070--Hb_001969_140 Hb_000418_020 Hb_000418_020 Hb_000997_070--Hb_000418_020 Hb_002311_130--Hb_002805_090 Hb_002400_060 Hb_002400_060 Hb_002311_130--Hb_002400_060 Hb_007313_040 Hb_007313_040 Hb_002311_130--Hb_007313_040 Hb_002311_130--Hb_001998_220 Hb_001473_170 Hb_001473_170 Hb_002311_130--Hb_001473_170 Hb_002311_130--Hb_005000_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.30483 26.5116 22.9328 45.6406 10.5263 9.32429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44112 3.33586 7.44978 27.8523 37.2309

CAGE analysis